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r-pipeline-development-workshop

Workshop on pipeline development and model deployment onto Kubernetes via Docker using R.

https://github.com/plant-food-research-open/r-pipeline-development-workshop

Science Score: 44.0%

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    CITATION.cff file
    Found CITATION.cff file
  • ✓
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    Found codemeta.json file
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    .zenodo.json file
    Found .zenodo.json file
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    Scientific vocabulary similarity
    Low similarity (9.4%) to scientific vocabulary

Keywords

bayesian-inference brms causal-inference causal-models cmdstan cmdstanr h2o h2o-automl h2oai r-language r-programming r-programming-language r-stats stan statistical-models statistics tidymodel tidymodeling tidymodels tidyverse
Last synced: 6 months ago · JSON representation ·

Repository

Workshop on pipeline development and model deployment onto Kubernetes via Docker using R.

Basic Info
Statistics
  • Stars: 2
  • Watchers: 0
  • Forks: 0
  • Open Issues: 12
  • Releases: 0
Topics
bayesian-inference brms causal-inference causal-models cmdstan cmdstanr h2o h2o-automl h2oai r-language r-programming r-programming-language r-stats stan statistical-models statistics tidymodel tidymodeling tidymodels tidyverse
Created 8 months ago · Last pushed 6 months ago
Metadata Files
Readme Contributing License Code of conduct Citation Security

README.md

R Pipeline Development Workshop

License pre-commit Build CodeQL Advanced

Website: R Pipeline Development Workshop

Workshops on pipeline development and model deployment onto Kubernetes via Docker using R.

Table of contents

Tidymodels and H2O

Coordinators

  • Jingjing Zhang (Jingjing.Zhang@plantandfood.co.nz)
  • Lindy Guo (Lindy.Guo@plantandfood.co.nz)
  • Hana Liang (Yongqi.Liang@plantandfood.co.nz)
  • James Bristow (James.Bristow@plantandfood.co.nz)

Stan and Causal Inference

Coordinators

  • Tom Moore (Tom.Moore@plantandfood.co.nz)
  • James Bristow (James.Bristow@plantandfood.co.nz)

Communication

Please refer to the following links:

Announcements

To view workshop announcements, please select this link.

Contributions and Support

Contributions are more than welcome. For general guidelines on how to contribute to this project, take a look at CONTRIBUTING.md.

License

The content for this workshop is published under the Apache License (see LICENSE).

Owner

  • Name: Plant-Food-Research-Open
  • Login: Plant-Food-Research-Open
  • Kind: organization

Citation (CITATION.cff) 

cff-version: 1.2.0
message: If you use this software, please cite it using these metadata.
authors:
  - family-names: "Bristow"
    given-names: "James"
    orcid: "https://orcid.org/0009-0002-3381-7466"
  - family-names: "Liang"
    given-names: "Hana"
    orcid: "https://orcid.org/0009-0008-3342-5028"
  - family-names: "Zhang"
    given-names: "Jingjing"
    orcid: "https://orcid.org/0000-0001-8809-3405"
  - family-names: "Guo"
    given-names: "Lindy"
    orcid: "https://orcid.org/0000-0002-8666-2173"
  - family-names: "Moore"
    given-names: "Tom"
    orcid: "https://orcid.org/0000-0002-8373-627X"
title: "R Pipeline Development Workshop"
version: 0.1.0
date-released: 2025-06-17
license: Apache-2.0
url: "https://github.com/Plant-Food-Research-Open/r-pipeline-development-workshop"

GitHub Events

Total
  • Delete event: 4
  • Issue comment event: 6
  • Push event: 5
  • Public event: 1
  • Pull request event: 6
  • Create event: 3
Last Year
  • Delete event: 4
  • Issue comment event: 6
  • Push event: 5
  • Public event: 1
  • Pull request event: 6
  • Create event: 3

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 0
  • Total pull requests: 5
  • Average time to close issues: N/A
  • Average time to close pull requests: about 1 month
  • Total issue authors: 0
  • Total pull request authors: 2
  • Average comments per issue: 0
  • Average comments per pull request: 0.6
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 4
Past Year
  • Issues: 0
  • Pull requests: 5
  • Average time to close issues: N/A
  • Average time to close pull requests: about 1 month
  • Issue authors: 0
  • Pull request authors: 2
  • Average comments per issue: 0
  • Average comments per pull request: 0.6
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 4
View more stats
Top Authors
Issue Authors
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  • dependabot[bot] (4)
  • jzha336 (1)
Top Labels
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dependencies (4) python (4)

Dependencies

.github/workflows/build-r.yaml actions
  • actions/checkout v3 composite
  • docker/login-action v2 composite
  • docker/setup-buildx-action v3 composite
  • docker/setup-qemu-action v3 composite
.github/workflows/build.yaml actions
  • actions/checkout v3 composite
  • docker/login-action v2 composite
  • docker/setup-buildx-action v3 composite
  • docker/setup-qemu-action v3 composite
.github/workflows/codeql.yaml actions
  • actions/checkout v4 composite
  • github/codeql-action/analyze v3 composite
  • github/codeql-action/init v3 composite
dockerfiles/superset/Dockerfile docker
  • apache/superset 402c29c-dev build
poetry.lock pypi
  • alembic 1.16.1
  • blinker 1.9.0
  • boto3 1.38.23
  • botocore 1.38.23
  • cachetools 5.5.2
  • certifi 2025.4.26
  • charset-normalizer 3.4.2
  • click 8.2.1
  • cloudpickle 3.1.1
  • colorama 0.4.6
  • contourpy 1.3.2
  • cycler 0.12.1
  • databricks-sdk 0.54.0
  • deprecated 1.2.18
  • docker 7.1.0
  • flask 3.1.1
  • fonttools 4.58.0
  • gitdb 4.0.12
  • gitpython 3.1.44
  • google-auth 2.40.2
  • graphene 3.4.3
  • graphql-core 3.2.6
  • graphql-relay 3.2.0
  • greenlet 3.2.2
  • gunicorn 23.0.0
  • idna 3.10
  • importlib-metadata 8.7.0
  • itsdangerous 2.2.0
  • jinja2 3.1.6
  • jmespath 1.0.1
  • joblib 1.5.1
  • kiwisolver 1.4.8
  • mako 1.3.10
  • markdown 3.8
  • markupsafe 3.0.2
  • matplotlib 3.10.3
  • mlflow 2.16.0
  • mlflow-skinny 2.16.0
  • numpy 2.2.6
  • opentelemetry-api 1.16.0
  • opentelemetry-sdk 1.16.0
  • opentelemetry-semantic-conventions 0.37b0
  • packaging 24.2
  • pandas 2.2.3
  • pillow 11.2.1
  • pip-system-certs 4.0
  • prometheus-client 0.22.0
  • prometheus-flask-exporter 0.23.2
  • protobuf 5.29.4
  • psycopg2-binary 2.9.10
  • pyarrow 17.0.0
  • pyasn1 0.6.1
  • pyasn1-modules 0.4.2
  • pyparsing 3.2.3
  • python-dateutil 2.9.0.post0
  • pytz 2025.2
  • pywin32 310
  • pyyaml 6.0.2
  • requests 2.32.3
  • rsa 4.9.1
  • s3transfer 0.13.0
  • scikit-learn 1.6.1
  • scipy 1.15.3
  • setuptools 80.8.0
  • six 1.17.0
  • smmap 5.0.2
  • sqlalchemy 2.0.41
  • sqlparse 0.5.3
  • threadpoolctl 3.6.0
  • tomli 2.2.1
  • typing-extensions 4.13.2
  • tzdata 2025.2
  • urllib3 2.4.0
  • waitress 3.0.2
  • werkzeug 3.1.3
  • wrapt 1.17.2
  • zipp 3.21.0
pyproject.toml pypi
  • alembic ^1.16.1
  • boto3 ^1.38.23
  • botocore ^1.38.23
  • flask ^3.1.1
  • mlflow <=2.16.0
  • numpy ^2.2.6
  • pandas ^2.2.3
  • pip-system-certs ^4.0
  • prometheus-flask-exporter ^0.23.2
  • psycopg2-binary ^2.9.10
  • python >=3.10,<=3.12
  • pyyaml ^6.0.2
  • scikit-learn ^1.6.1
  • scipy ^1.15.3
  • sqlalchemy ^2.0.41