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vasc-aop

Data and code for the "Innovative 3D-image analysis of cerebellar vascularization highlights transcriptomic changes in a murine model of apnea of prematurity" paper

https://github.com/agalic-rd/vasc-aop

Science Score: 67.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 4 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: researchgate.net, zenodo.org
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (13.2%) to scientific vocabulary

Keywords

bioinformatics data-science r statistics
Last synced: 6 months ago · JSON representation ·

Repository

Data and code for the "Innovative 3D-image analysis of cerebellar vascularization highlights transcriptomic changes in a murine model of apnea of prematurity" paper

Basic Info
  • Host: GitHub
  • Owner: agalic-rd
  • License: cc-by-4.0
  • Language: R
  • Default Branch: main
  • Homepage:
  • Size: 171 MB
Statistics
  • Stars: 0
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 1
Topics
bioinformatics data-science r statistics
Created almost 2 years ago · Last pushed 10 months ago
Metadata Files
Readme License Citation

README.md

Changes of cerebellar vascularization in a murine model of apnea of prematurity

[![License: CC BY 4.0](https://img.shields.io/badge/License-CC_BY_4.0-blue.svg)](https://creativecommons.org/licenses/by/4.0/) [![DOI](https://zenodo.org/badge/873064553.svg)](https://doi.org/10.5281/zenodo.15319299)

Note
This repository contains the data and R code for the "Innovative 3D-image analysis of cerebellar vascularization highlights transcriptomic changes in a murine model of apnea of prematurity." paper

Requirements

  • R version 4.3 or newer
  • R Studio version 2022.07 or newer

Repository structure

  • analysis/: R Markdown files containing the data analysis pipeline.
    • The first code chunk of any .Rmd file typically installs and loads all required packages based on the renv.lock.
  • data/: Contains the raw and processed data used in the analyses.
  • src/: R scripts declaring custom functions called within the analysis files (e.g., for plotting, data processing).
  • fig/: Stores figures generated during the analysis.
  • _configs.yml: Lists paths to external files (e.g., data) and potentially other configuration settings used within the code.
  • _dependencies.yml: Lists the R packages required for this project (managed by renv, you don't need to edit this file).
  • renv.lock: Records the exact versions of R packages used, ensuring reproducibility (managed by the renv package).
  • renv/: Directory used by the renv package to manage project-specific libraries. You don't need to edit this folder.

License

This project is licensed under the Creative Commons Attribution 4.0 International License - see the LICENSE file for details, or visit CC-BY 4.0.

Citation

  • Paper: TBA
  • Code: Agalic Rodriguez-Duboc, & Marc-Aurle Rivire. (2025). agalic-rd/Vasc-AoP: Initial release (v0.1). Zenodo. https://doi.org/10.5281/zenodo.15319299

Contributors

  • Agalic Rodriguez-Duboc:
    ORCID Research Gate

  • Marc-Aurle Rivire:
    ORCID Research Gate

Contact

For questions regarding the analyses, please contact: Agalic Rodriguez-Duboc

For any other questions, please contact the corresponding author: Delphine Burel

Owner

  • Name: Agalic Rodriguez-Duboc
  • Login: agalic-rd
  • Kind: user
  • Location: Rouen
  • Company: Inserm U1245

PhD Candidate in Molecular Neuroscience

Citation (CITATION.cff) 

# This CITATION.cff file was generated with Zotero.

cff-version: 1.2.0
message: >-
  If you use this software, please cite it using the metadata from this file.
title: >-
  agalic-rd/Vasc-AoP: Initial release
abstract: Data & R code associated with the 'Changes of cerebellar vascularization in a murine model of apnea of prematurity' project
type: software
license: Creative Commons Attribution 4.0 International
version: v0.1
url: https://doi.org/10.5281/zenodo.15319299
authors: 
  - family-names: Rodriguez-Duboc
    given-names: Agalic
    orcid: https://orcid.org/0000-0002-2084-3780
  - family-names: Rivière
    given-names: Marc-Aurèle
    orcid: https://orcid.org/0000-0002-5108-3382
date-released: 2025-05-01
identifiers: 
  - type: doi
    value: 10.5281/zenodo.15319299

GitHub Events

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Last Year
  • Release event: 1
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  • Push event: 3
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