caltechthesis

A test version of CaltechTHESIS on InvenioRDM

https://github.com/caltechlibrary/caltechthesis

Science Score: 67.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
  • codemeta.json file
    Found codemeta.json file
  • .zenodo.json file
    Found .zenodo.json file
  • DOI references
    Found 2 DOI reference(s) in README
  • Academic publication links
    Links to: zenodo.org
  • Committers with academic emails
    1 of 2 committers (50.0%) from academic institutions
  • Institutional organization owner
    Organization caltechlibrary has institutional domain (www.library.caltech.edu)
  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (14.1%) to scientific vocabulary
Last synced: 6 months ago · JSON representation

Repository

A test version of CaltechTHESIS on InvenioRDM

Basic Info
  • Host: GitHub
  • Owner: caltechlibrary
  • License: other
  • Language: HTML
  • Default Branch: main
  • Homepage:
  • Size: 3.96 MB
Statistics
  • Stars: 0
  • Watchers: 5
  • Forks: 0
  • Open Issues: 10
  • Releases: 0
Created over 2 years ago · Last pushed over 1 year ago
Metadata Files
Readme Contributing License Code of conduct Codemeta

README.md

CaltechTHESIS

This is the source repository for the in-development InvenioRDM version CaltechTHESIS, Caltech's Thesis Repository. It utilizes the latest version of the InvenioRDM repository platform, but is still in development and does not reflect a production setup.

License Latest release

Table of contents

Introduction

This repository was initialized following the InvenioRDM instructions/. It was then customized to meet the needs of the Caltech community. This is only one deployment example, and may or not be appropriate for your specific institution and IT setup.

Installation

We currently deploy CaltechTHESIS on a m7i-flex.xlarge AWS EC2 instance with Ubuntu 22.04. We use this cloud-init file to do most of the initial setup.

Install NVM

We haven't gotten NVM to install with cloud-init. Run curl -o- https://raw.githubusercontent.com/nvm-sh/nvm/v0.39.1/install.sh | bash, then reboot and type nvm install 16

Install InvenioRDM

Clone this repository into /Sites, then go to that directory. We need a local copy of idutils with local identifiers

git clone https://github.com/caltechlibrary/idutils.git cd idutils git checkout authors cd ../caltechthesis pipenv install invenio-cli packages install ../idutils invenio-cli services setup --no-demo-data

You'll need a .env file in /Sites, which includes secrets:

INVENIO_DATACITE_PASSWORD= INVENIO_SECRET_KEY= INVENIO_S3_ACCESS_KEY_ID= INVENIO_S3_SECRET_ACCESS_KEY= INVENIO_LOGGING_CONSOLE_LEVEL= INVENIO_MAIL_PASSWORD=

Edit /etc/sysctl.conf and add vm.maxmapcount=262144

This configuration uses S3 for storage. You need to change the bucket name with

pipenv run invenio files location s3-default s3://caltechthesis --default

Add access to the admin panel pipenv run invenio access allow administration-access role admin

Get the latest ROR data from https://doi.org/10.5281/zenodo.6347574 and import the funders vocabulary with

wget https://zenodo.org/record/7038913/files/v1.5-2022-08-31-ror-data.zip?download=1 -O ror.zip pipenv run invenio vocabularies import --vocabulary funders --origin "/Sites/caltechdata/ror.zip"

We have a local awards list, generated by https://github.com/caltechlibrary/irdmtools awards2vocabulary.py. Load into RDM with

` pipenv run invenio vocabularies import --vocabulary awards --filepath ./vocabularies-future.yaml

We have a local CaltechPEOPLE list, which is loaded with

pipenv run invenio vocabularies import --vocabulary names --filepath ./vocabularies-future.yaml

Domain Configuration

You'll need a domain name, and set an A record to point the domain name to your AWS instance.

Move nginx.conf to /etc/nginx/sites-enabled/default

Copy redirect-map.conf to /etc/nginx/

Get a certificate with sudo certbot --nginx

Restart nginx with sudo service nginx restart

Systemctl

We need three services to run InvenioRDM. Set them up with

sudo cp rdm_rest.service /etc/systemd/system/. sudo cp rdm.service /etc/systemd/system/. sudo cp rdm_celery.service /etc/systemd/system/. sudo systemctl daemon-reload sudo systemctl start rdm sudo systemctl start rdm_rest sudo systemctl start rdm_celery

You should now have a InvenioRDM repository fully running!

Usage

Stopping InvenioRDM

cd /Sites/caltechdata sudo systemctl stop nginx sudo systemctl stop rdm sudo systemctl stop rdm_rest sudo systemctl stop rdm_celery invenio-cli services stop

Starting InvenioRDM

cd /Sites/caltechdata invenio-cli services start sudo systemctl start rdm_celery sudo systemctl start rdm_rest sudo systemctl start rdm sudo systemctl start nginx

Known issues and limitations

These insttallation instructions are intended for this specific Caltech deployment, and you may need to modify them to work for your specific configuration.

Getting help

Please open an issue or pull request if you notice any problems or have questions.

Contributing

Please see our Contributing guidelines

License

Software produced by the Caltech Library is Copyright © 2024 California Institute of Technology. This software is freely distributed under a BSD/MIT type license. Please see the LICENSE file for more information.

Authors and history

Tom Morrell led the CaltechDATA InvenioRDM development. Tommy Keswick helped with themeing and site design. TUGraz and all the other InvenioRDM partners were instrumental in getting all the customizations working.

Acknowledgments

This work was funded by the California Institute of Technology Library.


Owner

  • Name: Caltech Library
  • Login: caltechlibrary
  • Kind: organization
  • Email: helpdesk@library.caltech.edu
  • Location: Pasadena, CA 91125

We manage the physical and digital holdings of the California Institute of Technology, provide services and training, and develop open-source software.

CodeMeta (codemeta.json)

{
  "@context": "https://doi.org/10.5063/schema/codemeta-2.0",
  "@type": "SoftwareSourceCode",
  "author": [
    {
      "@id": "https://orcid.org/0000-0001-9266-5146",
      "@type": "Person",
      "affiliation": {
        "@type": "Organization",
        "name": "Caltech Library"
      },
      "familyName": "Morrell",
      "givenName": "Thomas E."
    },
    {
      "@id": "https://orcid.org/0000-0001-5644-440X",
      "@type": "Person",
      "affiliation": {
        "@type": "Organization",
        "name": "Caltech Library"
      },
      "familyName": "Keswick",
      "givenName": "Tommy"
    },
    {
      "@id": "https://orcid.org/0000-0003-0900-6903",
      "@type": "Person",
      "affiliation": {
        "@type": "Organization",
        "name": "Caltech Library"
      },
      "familyName": "Doiel",
      "givenName": "Robert"
    },
    {
      "@id": "https://orcid.org/0000-0001-9105-5960",
      "@type": "Person",
      "affiliation": {
        "@type": "Organization",
        "name": "Caltech Library"
      },
      "familyName": "Hucka",
      "givenName": "Michael"
    }
  ],
  "issueTracker": "https://github.com/caltechlibrary/caltechdata/issues",
  "license": "https://github.com/caltechlibrary/caltechdata/blob/main/LICENSE",
  "developmentStatus": "active",
  "downloadUrl": "https://github.com/caltechlibrary/caltechdata/archive/main.zip",
  "codeRepository": "https://github.com/caltechlibrary/caltechdata",
  "datePublished": "2022-09-21",
  "keywords": [
    "InvenioRDM",
    "Institutional",
    "Repository"
  ],
  "name": "CaltechDATA Repository",
  "description": "InvenioRDM source for CaltechDATA Repository",
  "version": "1.0.2",
  "maintainer": "https://orcid.org/0000-0001-9266-5146",
  "funder": [
    {
      "@id": "https://doi.org/10.13039/100006961",
      "@type": "Organization",
      "name": "Caltech Library"
    }
  ]
}

GitHub Events

Total
  • Issues event: 1
Last Year
  • Issues event: 1

Committers

Last synced: 8 months ago

All Time
  • Total Commits: 127
  • Total Committers: 2
  • Avg Commits per committer: 63.5
  • Development Distribution Score (DDS): 0.008
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Tom Morrell t****l@c****u 126
R. S. Doiel r****l@g****m 1
Committer Domains (Top 20 + Academic)

Issues and Pull Requests

Last synced: 7 months ago

All Time
  • Total issues: 10
  • Total pull requests: 0
  • Average time to close issues: 2 days
  • Average time to close pull requests: N/A
  • Total issue authors: 1
  • Total pull request authors: 0
  • Average comments per issue: 0.1
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Top Authors
Issue Authors
  • tmorrell (11)
Pull Request Authors
Top Labels
Issue Labels
launch-critical (2) post-launch (1)
Pull Request Labels

Dependencies

Dockerfile docker
  • registry.cern.ch/inveniosoftware/almalinux 1 build
docker/nginx/Dockerfile docker
  • nginx latest build
docker-compose.full.yml docker
  • caltechauthors latest
docker-compose.yml docker
Pipfile pypi
  • check-manifest >=0.25 develop
  • caltechauthors *
  • invenio-app-rdm ~=12.0.0b2.dev68
  • invenio-assets >=v3.0.1
  • invenio-s3 *
  • invenio-saml *
  • python-dotenv *
  • sentry-sdk *
  • uwsgi >=2.0
  • uwsgi-tools >=1.1.1
  • uwsgitop >=0.11
Pipfile.lock pypi
  • 300 dependencies
site/pyproject.toml pypi
site/setup.py pypi