decitabine-treatment
A multiomics approach reveals RNA dynamics promote cellular sensitivity to DNA hypomethylation
Science Score: 36.0%
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Low similarity (4.8%) to scientific vocabulary
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Repository
A multiomics approach reveals RNA dynamics promote cellular sensitivity to DNA hypomethylation
Basic Info
- Host: GitHub
- Owner: GilbertLabUCSF
- License: mit
- Language: Jupyter Notebook
- Default Branch: main
- Homepage: https://www.nature.com/articles/s41598-024-77314-9
- Size: 3.58 GB
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- Stars: 1
- Watchers: 0
- Forks: 1
- Open Issues: 0
- Releases: 0
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Metadata Files
README.md
A multiomics approach reveals RNA dynamics promote cellular sensitivity to DNA hypomethylation
This repository contains all the scripts necessary for producing the results of the manuscript:
Raw data is also available at:
List of reproducible pipelines and other repositories developed as part of this project: - Differential gene expression analysis: The Salmon-tximport-DESeq2 pipeline - Differential RNA stability analysis: The STAR-featureCounts-REMBRANDTS-limma pipeline - Integrated methods for meRIP-seq data analysis https://github.com/abearab/imRIP - Pathway analysis using PAGE algorithm and downstream analysis https://github.com/abearab/pager - Scripts for mapping NGS reads to HERVs https://github.com/abearab/HERVs
This repo has been developed in Gilbert at UCSF and Arc Institute by Abolfazl Arab, in collaboration with Goodarzi lab at UCSF. This also incldue some original/revised codes from Alex Y. Ge, Hosseinali Asgharian, and Hani Goodarzi.
Owner
- Name: GILBERT LAB
- Login: GilbertLabUCSF
- Kind: organization
- Website: https://www.gilbertlabucsf.com/
- Repositories: 2
- Profile: https://github.com/GilbertLabUCSF
GitHub Events
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- Issues event: 1
- Push event: 1
- Fork event: 1
Last Year
- Issues event: 1
- Push event: 1
- Fork event: 1