pairwise-pubmed-search-generator
A web application for building PubMed search strings from pairwise combinations of two lists.
https://github.com/marijane/pairwise-pubmed-search-generator
Science Score: 67.0%
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✓CITATION.cff file
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✓codemeta.json file
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✓.zenodo.json file
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✓DOI references
Found 2 DOI reference(s) in README -
✓Academic publication links
Links to: zenodo.org -
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (3.8%) to scientific vocabulary
Keywords
Repository
A web application for building PubMed search strings from pairwise combinations of two lists.
Basic Info
- Host: GitHub
- Owner: marijane
- License: apache-2.0
- Language: Python
- Default Branch: main
- Homepage: https://pairwise-pubmed.streamlit.app/
- Size: 62.5 KB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Topics
Metadata Files
README.md
🔎 Pairwise PubMed Search Generator 🔎
The Pairwise PubMed Search Generator is a web application for working around the truncation limitation in PubMed’s proximity search. It simplifies the creation of two-concept proximity search strategies by eliminating the need to type out every variation by hand. Users enter two lists of terms, one for each concept, containing variations of each term. The tool does the rest, generating formatted PubMed search strings containing every pairwise combination of the two lists with the necessary search syntax, which can then be copied to the clipboard or launched in PubMed. In addition to generating proximity search strings, it can also combine a list of MeSH main headings with a list of subheadings and combine two lists of keyword terms in a traditional Boolean AND search.
Owner
- Name: marijane white
- Login: marijane
- Kind: user
- Location: Portland, OR
- Company: @OHSU-Library
- Twitter: marijaneWhite
- Repositories: 4
- Profile: https://github.com/marijane
Data and Research Engagement Librarian, Assistant Professor
Citation (CITATION.cff)
cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
- family-names: White
given-names: Marijane
orcid: https://orcid.org/0000-0001-5059-4132
title: "Pairwise PubMed Search Generator"
version: v1.0.0
identifiers:
- type: doi
value: 10.5281/zenodo.14768348
date-released: 2025-01-29
url: https://github.com/marijane/pairwise-pubmed-search-generator
GitHub Events
Total
- Release event: 1
- Push event: 31
- Create event: 3
Last Year
- Release event: 1
- Push event: 31
- Create event: 3
Dependencies
- streamlit *