projr

Streamline R projects

https://github.com/satvilab/projr

Science Score: 52.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
    Found CITATION.cff file
  • codemeta.json file
    Found codemeta.json file
  • .zenodo.json file
    Found .zenodo.json file
  • DOI references
  • Academic publication links
  • Academic email domains
  • Institutional organization owner
    Organization satvilab has institutional domain (satvi.uct.ac.za)
  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (5.5%) to scientific vocabulary

Keywords

r reproducible-research workflow
Last synced: 6 months ago · JSON representation ·

Repository

Streamline R projects

Basic Info
Statistics
  • Stars: 1
  • Watchers: 0
  • Forks: 1
  • Open Issues: 110
  • Releases: 0
Topics
r reproducible-research workflow
Created almost 4 years ago · Last pushed 7 months ago
Metadata Files
Readme Changelog License Citation Codemeta

README.md

projr

R-CMD-check <!-- badges: end -->

The goal of projr is to ...

Installation

You can install the development version of projr from GitHub with:

``` r

install.packages("devtools")

devtools::install_github("SATVILab/projr") ```

Example

This is a basic example which shows you how to solve a common problem:

``` r library(projr)

basic example code

```

Owner

  • Name: SATVI, University of Cape Town
  • Login: SATVILab
  • Kind: organization
  • Location: South Africa

Research Centre at the University of Cape Town

Citation (CITATION.cff)

# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "projr" in publications use:'
type: software
title: 'projr: Facilitate reproducible and archived projects'
version: 0.2.18
abstract: Facilitate reproducible and archived projects.
authors:
- family-names: Rodo
  given-names: Miguel
  email: miguel.rodo@uct.ac.za
  orcid: https://orcid.org/0000-0002-2036-4878
preferred-citation:
  type: generic
  title: 'projr: Facilitate reproducible and archived projects'
  authors:
  - family-names: Rodo
    given-names: Miguel
    email: miguel.rodo@uct.ac.za
    orcid: https://orcid.org/0000-0002-2036-4878
  url: https://satvilab.github.io/projr/
  abstract: Facilitate reproducible and archived projects.
  version: 0.0.9-10
url: https://satvilab.github.io/projr/
contact:
- family-names: Rodo
  given-names: Miguel
  email: miguel.rodo@uct.ac.za
  orcid: https://orcid.org/0000-0002-2036-4878
references:
- type: software
  title: renv
  abstract: 'renv: Project Environments'
  notes: Imports
  url: https://rstudio.github.io/renv/
  repository: https://CRAN.R-project.org/package=renv
  authors:
  - family-names: Ushey
    given-names: Kevin
    email: kevin@rstudio.com
    orcid: https://orcid.org/0000-0003-2880-7407
  - family-names: Wickham
    given-names: Hadley
    email: hadley@rstudio.com
    orcid: https://orcid.org/0000-0003-4757-117X
  year: '2025'
  doi: 10.32614/CRAN.package.renv
- type: software
  title: jsonlite
  abstract: 'jsonlite: A Simple and Robust JSON Parser and Generator for R'
  notes: Imports
  url: https://jeroen.r-universe.dev/jsonlite
  repository: https://CRAN.R-project.org/package=jsonlite
  authors:
  - family-names: Ooms
    given-names: Jeroen
    email: jeroenooms@gmail.com
    orcid: https://orcid.org/0000-0002-4035-0289
  year: '2025'
  identifiers:
  - type: url
    value: https://arxiv.org/abs/1403.2805
  doi: 10.32614/CRAN.package.jsonlite
- type: software
  title: yaml
  abstract: 'yaml: Methods to Convert R Data to YAML and Back'
  notes: Imports
  url: https://github.com/vubiostat/r-yaml/
  repository: https://CRAN.R-project.org/package=yaml
  authors:
  - family-names: Garbett
    given-names: Shawn P
  - family-names: Stephens
    given-names: Jeremy
  - family-names: Simonov
    given-names: Kirill
  - family-names: Xie
    given-names: Yihui
  - family-names: Dong
    given-names: Zhuoer
  - family-names: Wickham
    given-names: Hadley
  - family-names: Horner
    given-names: Jeffrey
  - name: reikoch
  - family-names: Beasley
    given-names: Will
  - family-names: O'Connor
    given-names: Brendan
  - family-names: Warnes
    given-names: Gregory R.
  - family-names: Quinn
    given-names: Michael
  - family-names: Kamvar
    given-names: Zhian N.
  - family-names: Gao
    given-names: Charlie
  year: '2025'
  doi: 10.32614/CRAN.package.yaml
- type: software
  title: rprojroot
  abstract: 'rprojroot: Finding Files in Project Subdirectories'
  notes: Imports
  url: https://rprojroot.r-lib.org/
  repository: https://CRAN.R-project.org/package=rprojroot
  authors:
  - family-names: Müller
    given-names: Kirill
    email: kirill@cynkra.com
    orcid: https://orcid.org/0000-0002-1416-3412
  year: '2025'
  doi: 10.32614/CRAN.package.rprojroot
- type: software
  title: desc
  abstract: 'desc: Manipulate DESCRIPTION Files'
  notes: Imports
  url: https://desc.r-lib.org/
  repository: https://CRAN.R-project.org/package=desc
  authors:
  - family-names: Csárdi
    given-names: Gábor
    email: csardi.gabor@gmail.com
  - family-names: Müller
    given-names: Kirill
  - family-names: Hester
    given-names: Jim
    email: james.f.hester@gmail.com
  year: '2025'
  doi: 10.32614/CRAN.package.desc
- type: software
  title: fs
  abstract: 'fs: Cross-Platform File System Operations Based on ''libuv'''
  notes: Imports
  url: https://fs.r-lib.org
  repository: https://CRAN.R-project.org/package=fs
  authors:
  - family-names: Hester
    given-names: Jim
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  - family-names: Csárdi
    given-names: Gábor
    email: csardi.gabor@gmail.com
  year: '2025'
  doi: 10.32614/CRAN.package.fs
- type: software
  title: digest
  abstract: 'digest: Create Compact Hash Digests of R Objects'
  notes: Imports
  url: https://dirk.eddelbuettel.com/code/digest.html
  repository: https://CRAN.R-project.org/package=digest
  authors:
  - family-names: Eddelbuettel
    given-names: Dirk
    email: edd@debian.org
    orcid: https://orcid.org/0000-0001-6419-907X
  year: '2025'
  doi: 10.32614/CRAN.package.digest
- type: software
  title: remotes
  abstract: 'remotes: R Package Installation from Remote Repositories, Including ''GitHub'''
  notes: Suggests
  url: https://remotes.r-lib.org
  repository: https://CRAN.R-project.org/package=remotes
  authors:
  - family-names: Csárdi
    given-names: Gábor
    email: csardi.gabor@gmail.com
  - family-names: Hester
    given-names: Jim
  - family-names: Wickham
    given-names: Hadley
  - family-names: Chang
    given-names: Winston
  - family-names: Morgan
    given-names: Martin
  - family-names: Tenenbaum
    given-names: Dan
  year: '2025'
  doi: 10.32614/CRAN.package.remotes
- type: software
  title: roxygen2
  abstract: 'roxygen2: In-Line Documentation for R'
  notes: Suggests
  url: https://roxygen2.r-lib.org/
  repository: https://CRAN.R-project.org/package=roxygen2
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
    orcid: https://orcid.org/0000-0003-4757-117X
  - family-names: Danenberg
    given-names: Peter
    email: pcd@roxygen.org
  - family-names: Csárdi
    given-names: Gábor
    email: csardi.gabor@gmail.com
  - family-names: Eugster
    given-names: Manuel
  year: '2025'
  doi: 10.32614/CRAN.package.roxygen2
- type: software
  title: usethis
  abstract: 'usethis: Automate Package and Project Setup'
  notes: Suggests
  url: https://usethis.r-lib.org
  repository: https://CRAN.R-project.org/package=usethis
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
    orcid: https://orcid.org/0000-0003-4757-117X
  - family-names: Bryan
    given-names: Jennifer
    email: jenny@posit.co
    orcid: https://orcid.org/0000-0002-6983-2759
  - family-names: Barrett
    given-names: Malcolm
    email: malcolmbarrett@gmail.com
    orcid: https://orcid.org/0000-0003-0299-5825
  - family-names: Teucher
    given-names: Andy
    email: andy.teucher@posit.co
    orcid: https://orcid.org/0000-0002-7840-692X
  year: '2025'
  doi: 10.32614/CRAN.package.usethis
- type: software
  title: gert
  abstract: 'gert: Simple Git Client for R'
  notes: Suggests
  url: https://docs.ropensci.org/gert/
  repository: https://CRAN.R-project.org/package=gert
  authors:
  - family-names: Ooms
    given-names: Jeroen
    email: jeroenooms@gmail.com
    orcid: https://orcid.org/0000-0002-4035-0289
  year: '2025'
  doi: 10.32614/CRAN.package.gert
- type: software
  title: gh
  abstract: 'gh: ''GitHub'' ''API'''
  notes: Suggests
  url: https://gh.r-lib.org/
  repository: https://CRAN.R-project.org/package=gh
  authors:
  - family-names: Bryan
    given-names: Jennifer
  - family-names: Wickham
    given-names: Hadley
  year: '2025'
  doi: 10.32614/CRAN.package.gh
- type: software
  title: credentials
  abstract: 'credentials: Tools for Managing SSH and Git Credentials'
  notes: Suggests
  url: https://docs.ropensci.org/credentials/
  repository: https://CRAN.R-project.org/package=credentials
  authors:
  - family-names: Ooms
    given-names: Jeroen
    email: jeroenooms@gmail.com
    orcid: https://orcid.org/0000-0002-4035-0289
  year: '2025'
  identifiers:
  - type: url
    value: https://r-lib.r-universe.dev/credentials
  doi: 10.32614/CRAN.package.credentials
- type: software
  title: gitcreds
  abstract: 'gitcreds: Query ''git'' Credentials from ''R'''
  notes: Suggests
  url: https://gitcreds.r-lib.org/
  repository: https://CRAN.R-project.org/package=gitcreds
  authors:
  - family-names: Csárdi
    given-names: Gábor
    email: csardi.gabor@gmail.com
  year: '2025'
  doi: 10.32614/CRAN.package.gitcreds
- type: software
  title: piggyback
  abstract: 'piggyback: Managing Larger Data on a GitHub Repository'
  notes: Suggests
  url: https://github.com/ropensci/piggyback
  repository: https://CRAN.R-project.org/package=piggyback
  authors:
  - family-names: Boettiger
    given-names: Carl
    email: cboettig@gmail.com
    orcid: https://orcid.org/0000-0002-1642-628X
  - family-names: Ho
    given-names: Tan
    orcid: https://orcid.org/0000-0001-8388-5155
  year: '2025'
  doi: 10.32614/CRAN.package.piggyback
- type: software
  title: osfr
  abstract: 'osfr: Interface to the ''Open Science Framework'' (''OSF'')'
  notes: Suggests
  url: https://docs.ropensci.org/osfr/
  repository: https://CRAN.R-project.org/package=osfr
  authors:
  - family-names: Wolen
    given-names: Aaron
    email: aaron@wolen.com
    orcid: https://orcid.org/0000-0003-2542-2202
  - family-names: Hartgerink
    given-names: Chris
    email: chjh@protonmail.com
    orcid: https://orcid.org/0000-0003-1050-6809
  year: '2025'
  doi: 10.32614/CRAN.package.osfr
- type: software
  title: codemeta
  abstract: 'codemeta: A Smaller ''codemetar'' Package'
  notes: Suggests
  url: https://github.com/cboettig/codemeta
  repository: https://CRAN.R-project.org/package=codemeta
  authors:
  - family-names: Boettiger
    given-names: Carl
    email: cboettig@gmail.com
    orcid: https://orcid.org/0000-0002-1642-628X
  - family-names: Salmon
    given-names: Maëlle
    orcid: https://orcid.org/0000-0002-2815-0399
  year: '2025'
  doi: 10.32614/CRAN.package.codemeta
- type: software
  title: cffr
  abstract: 'cffr: Generate Citation File Format (''cff'') Metadata for R Packages'
  notes: Suggests
  url: https://docs.ropensci.org/cffr/
  repository: https://CRAN.R-project.org/package=cffr
  authors:
  - family-names: Hernangómez
    given-names: Diego
    email: diego.hernangomezherrero@gmail.com
    orcid: https://orcid.org/0000-0001-8457-4658
  year: '2025'
  doi: 10.32614/CRAN.package.cffr
- type: software
  title: pkgbuild
  abstract: 'pkgbuild: Find Tools Needed to Build R Packages'
  notes: Suggests
  url: https://pkgbuild.r-lib.org
  repository: https://CRAN.R-project.org/package=pkgbuild
  authors:
  - family-names: Wickham
    given-names: Hadley
  - family-names: Hester
    given-names: Jim
  - family-names: Csárdi
    given-names: Gábor
    email: csardi.gabor@gmail.com
  year: '2025'
  doi: 10.32614/CRAN.package.pkgbuild
- type: software
  title: rmarkdown
  abstract: 'rmarkdown: Dynamic Documents for R'
  notes: Suggests
  url: https://pkgs.rstudio.com/rmarkdown/
  repository: https://CRAN.R-project.org/package=rmarkdown
  authors:
  - family-names: Allaire
    given-names: JJ
    email: jj@posit.co
  - family-names: Xie
    given-names: Yihui
    email: xie@yihui.name
    orcid: https://orcid.org/0000-0003-0645-5666
  - family-names: Dervieux
    given-names: Christophe
    email: cderv@posit.co
    orcid: https://orcid.org/0000-0003-4474-2498
  - family-names: McPherson
    given-names: Jonathan
    email: jonathan@posit.co
  - family-names: Luraschi
    given-names: Javier
  - family-names: Ushey
    given-names: Kevin
    email: kevin@posit.co
  - family-names: Atkins
    given-names: Aron
    email: aron@posit.co
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  - family-names: Cheng
    given-names: Joe
    email: joe@posit.co
  - family-names: Chang
    given-names: Winston
    email: winston@posit.co
  - family-names: Iannone
    given-names: Richard
    email: rich@posit.co
    orcid: https://orcid.org/0000-0003-3925-190X
  year: '2025'
  doi: 10.32614/CRAN.package.rmarkdown
- type: software
  title: bookdown
  abstract: 'bookdown: Authoring Books and Technical Documents with R Markdown'
  notes: Suggests
  url: https://pkgs.rstudio.com/bookdown/
  repository: https://CRAN.R-project.org/package=bookdown
  authors:
  - family-names: Xie
    given-names: Yihui
    email: xie@yihui.name
    orcid: https://orcid.org/0000-0003-0645-5666
  year: '2025'
  doi: 10.32614/CRAN.package.bookdown
- type: software
  title: knitr
  abstract: 'knitr: A General-Purpose Package for Dynamic Report Generation in R'
  notes: Suggests
  url: https://yihui.org/knitr/
  repository: https://CRAN.R-project.org/package=knitr
  authors:
  - family-names: Xie
    given-names: Yihui
    email: xie@yihui.name
    orcid: https://orcid.org/0000-0003-0645-5666
  year: '2025'
  doi: 10.32614/CRAN.package.knitr
- type: software
  title: quarto
  abstract: 'quarto: R Interface to ''Quarto'' Markdown Publishing System'
  notes: Suggests
  url: https://quarto-dev.github.io/quarto-r/
  repository: https://CRAN.R-project.org/package=quarto
  authors:
  - family-names: Allaire
    given-names: JJ
    email: jj@posit.co
    orcid: https://orcid.org/0000-0003-0174-9868
  - family-names: Dervieux
    given-names: Christophe
    email: cderv@posit.co
    orcid: https://orcid.org/0000-0003-4474-2498
  year: '2025'
  doi: 10.32614/CRAN.package.quarto
- type: software
  title: testthat
  abstract: 'testthat: Unit Testing for R'
  notes: Suggests
  url: https://testthat.r-lib.org
  repository: https://CRAN.R-project.org/package=testthat
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  year: '2025'
  doi: 10.32614/CRAN.package.testthat
  version: '>= 3.0.0'
- type: software
  title: devtools
  abstract: 'devtools: Tools to Make Developing R Packages Easier'
  notes: Suggests
  url: https://devtools.r-lib.org/
  repository: https://CRAN.R-project.org/package=devtools
  authors:
  - family-names: Wickham
    given-names: Hadley
  - family-names: Hester
    given-names: Jim
  - family-names: Chang
    given-names: Winston
  - family-names: Bryan
    given-names: Jennifer
    email: jenny@rstudio.com
    orcid: https://orcid.org/0000-0002-6983-2759
  year: '2025'
  doi: 10.32614/CRAN.package.devtools
- type: software
  title: httr
  abstract: 'httr: Tools for Working with URLs and HTTP'
  notes: Suggests
  url: https://httr.r-lib.org/
  repository: https://CRAN.R-project.org/package=httr
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  year: '2025'
  doi: 10.32614/CRAN.package.httr
- type: software
  title: covr
  abstract: 'covr: Test Coverage for Packages'
  notes: Suggests
  url: https://covr.r-lib.org
  repository: https://CRAN.R-project.org/package=covr
  authors:
  - family-names: Hester
    given-names: Jim
    email: james.f.hester@gmail.com
  year: '2025'
  doi: 10.32614/CRAN.package.covr
- type: software
  title: htmltools
  abstract: 'htmltools: Tools for HTML'
  notes: Suggests
  url: https://rstudio.github.io/htmltools/
  repository: https://CRAN.R-project.org/package=htmltools
  authors:
  - family-names: Cheng
    given-names: Joe
    email: joe@posit.co
  - family-names: Sievert
    given-names: Carson
    email: carson@posit.co
    orcid: https://orcid.org/0000-0002-4958-2844
  - family-names: Schloerke
    given-names: Barret
    email: barret@posit.co
    orcid: https://orcid.org/0000-0001-9986-114X
  - family-names: Chang
    given-names: Winston
    email: winston@posit.co
    orcid: https://orcid.org/0000-0002-1576-2126
  - family-names: Xie
    given-names: Yihui
    email: yihui@posit.co
  - family-names: Allen
    given-names: Jeff
  year: '2025'
  doi: 10.32614/CRAN.package.htmltools
- type: software
  title: DT
  abstract: 'DT: A Wrapper of the JavaScript Library ''DataTables'''
  notes: Suggests
  url: https://github.com/rstudio/DT
  repository: https://CRAN.R-project.org/package=DT
  authors:
  - family-names: Xie
    given-names: Yihui
  - family-names: Cheng
    given-names: Joe
    email: joe@posit.co
  - family-names: Tan
    given-names: Xianying
  year: '2025'
  doi: 10.32614/CRAN.package.DT
- type: software
  title: rlang
  abstract: 'rlang: Functions for Base Types and Core R and ''Tidyverse'' Features'
  notes: Suggests
  url: https://rlang.r-lib.org
  repository: https://CRAN.R-project.org/package=rlang
  authors:
  - family-names: Henry
    given-names: Lionel
    email: lionel@posit.co
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  year: '2025'
  doi: 10.32614/CRAN.package.rlang
- type: software
  title: withr
  abstract: 'withr: Run Code ''With'' Temporarily Modified Global State'
  notes: Suggests
  url: https://withr.r-lib.org
  repository: https://CRAN.R-project.org/package=withr
  authors:
  - family-names: Hester
    given-names: Jim
  - family-names: Henry
    given-names: Lionel
    email: lionel@posit.co
  - family-names: Müller
    given-names: Kirill
    email: krlmlr+r@mailbox.org
  - family-names: Ushey
    given-names: Kevin
    email: kevinushey@gmail.com
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  - family-names: Chang
    given-names: Winston
  year: '2025'
  doi: 10.32614/CRAN.package.withr
- type: software
  title: BiocManager
  abstract: 'BiocManager: Access the Bioconductor Project Package Repository'
  notes: Suggests
  url: https://bioconductor.github.io/BiocManager/
  repository: https://CRAN.R-project.org/package=BiocManager
  authors:
  - family-names: Morgan
    given-names: Martin
    email: martin.morgan@roswellpark.org
    orcid: https://orcid.org/0000-0002-5874-8148
  - family-names: Ramos
    given-names: Marcel
    email: marcel.ramos@sph.cuny.edu
    orcid: https://orcid.org/0000-0002-3242-0582
  year: '2025'
  doi: 10.32614/CRAN.package.BiocManager
- type: software
  title: cli
  abstract: 'cli: Helpers for Developing Command Line Interfaces'
  notes: Suggests
  url: https://cli.r-lib.org
  repository: https://CRAN.R-project.org/package=cli
  authors:
  - family-names: Csárdi
    given-names: Gábor
    email: gabor@posit.co
  year: '2025'
  doi: 10.32614/CRAN.package.cli

CodeMeta (codemeta.json)

{
  "@context": "https://doi.org/10.5063/schema/codemeta-2.0",
  "@type": "SoftwareSourceCode",
  "identifier": "projr",
  "description": "Facilitate reproducible and archived projects.",
  "name": "projr: Facilitate reproducible and archived projects",
  "codeRepository": "https://satvilab.github.io/projr/",
  "license": "file LICENSE",
  "version": "0.2.18",
  "programmingLanguage": {
    "@type": "ComputerLanguage",
    "name": "R",
    "url": "https://r-project.org"
  },
  "runtimePlatform": "R version 4.4.2 (2024-10-31)",
  "author": [
    {
      "@type": "Person",
      "givenName": "Miguel",
      "familyName": "Rodo",
      "email": "miguel.rodo@uct.ac.za",
      "@id": "https://orcid.org/0000-0002-2036-4878"
    }
  ],
  "maintainer": [
    {
      "@type": "Person",
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bug (17) build (5) init (4) future (3) convenience (2) ext-repo (2) v1.0.0 (2) template (1) output (1) dependencies (1) fast (1) code quality (1) documentation (1) data-raw (1) records (1) next (1)
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init (1) convenience (1)