grand-challenge.org

A platform for end-to-end development of machine learning solutions in biomedical imaging

https://github.com/comic/grand-challenge.org

Science Score: 64.0%

This score indicates how likely this project is to be science-related based on various indicators:

✓
CITATION.cff file
Found CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
✓
.zenodo.json file
Found .zenodo.json file
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DOI references
✓
Academic publication links
Links to: zenodo.org
✓
Committers with academic emails
2 of 42 committers (4.8%) from academic institutions
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Institutional organization owner
○
JOSS paper metadata
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Scientific vocabulary similarity
Low similarity (9.8%) to scientific vocabulary

Keywords

ai challenges computer-vision django django-rest-framework docker machine-learning medical-imaging python reproducible-research

Keywords from Contributors

transformer cameratrap

Last synced: 6 months ago · JSON representation ·

Repository

A platform for end-to-end development of machine learning solutions in biomedical imaging

Basic Info

Host: GitHub
Owner: comic
License: apache-2.0
Language: Python
Default Branch: main
Homepage: https://grand-challenge.org
Size: 68.7 MB

Statistics

Stars: 182
Watchers: 14
Forks: 58
Open Issues: 53
Releases: 26

Topics

ai challenges computer-vision django django-rest-framework docker machine-learning medical-imaging python reproducible-research

Created over 13 years ago · Last pushed 6 months ago

Metadata Files

Readme License Code of conduct Citation Codeowners Notice

grand-challenge.org

In the era of Deep Learning, developing robust machine learning solutions to problems in biomedical imaging requires access to large amounts of annotated training data, fair comparisons of state of the art machine learning solutions, and clinical validation using real world data. Grand Challenge can assist Researchers, Data Scientists, and Clinicians in collaborating to develop these solutions by providing:

Archives: Manage medical imaging data.
Reader Studies: Train experts and have them annotate medical imaging data.
Challenges: Gather and assess machine learning solutions.
Algorithms: Deploy machine learning solutions for clinical validation.

If you would like to start your own website, or contribute to the development of the framework, please see the docs.

Owner

Name: Consortium for Open Medical Image Computing
Login: comic
Kind: organization

Repositories: 2
Profile: https://github.com/comic

Citation (CITATION.cff)

message: If you use this software, please cite it using these metadata.
cff-version: 1.2.0
title: Grand-Challenge.org
abstract: A platform for end-to-end development of machine learning solutions in biomedical imaging
license: Apache-2.0
authors:
    - affiliation: Department of Radiology, Nuclear Medicine and Anatomy, Radboud University Medical Center, P.O. Box 9101, 6500 HB Nijmegen, the Netherlands
      family-names: Meakin
      given-names: James
    - affiliation: Department of Radiology, Nuclear Medicine and Anatomy, Radboud University Medical Center, P.O. Box 9101, 6500 HB Nijmegen, the Netherlands
      family-names: Gerke
      given-names: Paul K.
    - affiliation: Department of Radiology, Nuclear Medicine and Anatomy, Radboud University Medical Center, P.O. Box 9101, 6500 HB Nijmegen, the Netherlands
      family-names: Kerkstra
      given-names: Sjoerd
    - affiliation: Department of Radiology, Nuclear Medicine and Anatomy, Radboud University Medical Center, P.O. Box 9101, 6500 HB Nijmegen, the Netherlands
      family-names: Groeneveld
      given-names: Miriam
    - affiliation: Department of Radiology, Nuclear Medicine and Anatomy, Radboud University Medical Center, P.O. Box 9101, 6500 HB Nijmegen, the Netherlands
      family-names: van Leeuwen
      given-names: Kicky
    - affiliation: Department of Radiology, Nuclear Medicine and Anatomy, Radboud University Medical Center, P.O. Box 9101, 6500 HB Nijmegen, the Netherlands
      family-names: Mickan
      given-names: Anne
    - affiliation: Department of Radiology, Nuclear Medicine and Anatomy, Radboud University Medical Center, P.O. Box 9101, 6500 HB Nijmegen, the Netherlands
      family-names: Overkamp
      given-names: Mike
    - affiliation: Department of Radiology, Nuclear Medicine and Anatomy, Radboud University Medical Center, P.O. Box 9101, 6500 HB Nijmegen, the Netherlands
      family-names: van Run
      given-names: Chris
    - affiliation: Department of Radiology, Nuclear Medicine and Anatomy, Radboud University Medical Center, P.O. Box 9101, 6500 HB Nijmegen, the Netherlands
      family-names: van Zeeland
      given-names: Harm
    - affiliation: Department of Radiology, Nuclear Medicine and Anatomy, Radboud University Medical Center, P.O. Box 9101, 6500 HB Nijmegen, the Netherlands
      family-names: van Ginneken
      given-names: Bram
      orcid: https://orcid.org/0000-0003-2028-8972
doi: 10.5281/zenodo.3356819
repository-code: https://github.com/comic/grand-challenge.org

Committers

Last synced: almost 3 years ago

All Time

Total Commits: 5,446
Total Committers: 42
Avg Commits per committer: 129.667
Development Distribution Score (DDS): 0.77

Top Committers

Name	Email	Commits
James Meakin	j**n@g**m	1,255
sjoerdk	w**a@g**m	1,181
James	1**n@u**m	914
James Meakin	c**e@j**m	618
Harm van Zeeland	h**d@g**m	339
Anne Mickan	a**0@g**m	243
Mike Overkamp	5**g@u**m	170
Paul K. Gerke	p**t@g**m	97
koekie	m**k@e**l	84
james	j**n@r**l	76
HarmvZ	H**Z@u**m	70
miriam-groeneveld	5**d@u**m	50
=	=	40
Chris van Run	c**n@u**m	38
haimasree	h**g@g**m	36
Hans Pinckaers	h**s@g**m	35
Kicksta	k**n@g**m	34
github-actions[bot]	4**]@u**m	27
CShneider	s**l@g**m	25
Bart De Dobbelaer	b**r@g**m	16
Alexander Koehn	a**n@m**e	16
Marcel Koek	k**l@g**m	11
Roel Zinkstok	r**k@g**m	10
Sil van de Leemput	s**t@u**m	9
Miriam-Groeneveld	M**g@g**m	8
Nikolas Lessmann	7**n@u**m	8
CristinaGGonzalo	c**o@g**m	6
ecemlago	e**o@r**l	6
Hans Meine	h**e@g**t	5
root	r**t@c**e	4
and 12 more...

Committer Domains (Top 20 + Academic)

radboudumc.nl: 3 akoehn-nb.fme.lan: 1 comic.cevis.uni-bremen.de: 1 gmx.net: 1 mevis.fraunhofer.de: 1 erasmusmc.nl: 1 jmsmkn.com: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time

Total issues: 239
Total pull requests: 785
Average time to close issues: 2 months
Average time to close pull requests: 3 days
Total issue authors: 13
Total pull request authors: 10
Average comments per issue: 1.96
Average comments per pull request: 0.72
Merged pull requests: 583
Bot issues: 0
Bot pull requests: 74

Past Year

Issues: 149
Pull requests: 481
Average time to close issues: 14 days
Average time to close pull requests: 3 days
Issue authors: 11
Pull request authors: 9
Average comments per issue: 1.52
Average comments per pull request: 0.79
Merged pull requests: 336
Bot issues: 0
Bot pull requests: 39

View more stats

Top Authors

Issue Authors

jmsmkn (110)
chrisvanrun (43)
pkcakeout (21)
amickan (20)
miriam-groeneveld (14)
HarmvZ (14)
koopmant (8)
ammar257ammar (4)
rashindrie (1)
imnishat (1)
new-bajie (1)
LindaSt (1)
kiranvaidhya (1)

Pull Request Authors

jmsmkn (278)
amickan (161)
chrisvanrun (91)
github-actions[bot] (74)
ammar257ammar (73)
koopmant (68)
HarmvZ (21)
pkcakeout (11)
miriam-groeneveld (6)
Kicksta (2)

Top Labels

Issue Labels

bug (10) good-first-issue (10) bug squash candidate (3) feature-request (2) priority/p2 (1) area/archives (1) area/reader-studies (1) area/docs (1)

Pull Request Labels

do-not-merge (2) good-first-issue (2) bug (2) feature-request (1) area/reader-studies (1)

Dependencies

.github/workflows/ci.yml actions

actions/checkout v3 composite
actions/setup-python v4 composite
aws-actions/configure-aws-credentials v1 composite
peaceiris/actions-gh-pages v3 composite

.github/workflows/dependency-update.yml actions

actions/checkout v3 composite
actions/setup-python v4 composite
peter-evans/create-pull-request v4 composite

app/tests/algorithms_tests/resources/docker/Dockerfile docker

python 3.10-alpine build

app/tests/evaluation_tests/resources/docker/Dockerfile docker

python 3.10-alpine build

app/tests/resources/gc_demo_algorithm/Dockerfile docker

python 3.10-alpine build

app/tests/workstations_tests/resources/docker/Dockerfile docker

python 3.10-alpine build

dockerfiles/http/Dockerfile docker

nginx 1.20 build

dockerfiles/web/Dockerfile docker

${GRAND_CHALLENGE_WEB_BASE_REPOSITORY_URI} ${PYTHON_VERSION}-${POETRY_HASH} build
${GRAND_CHALLENGE_WEB_TEST_BASE_REPOSITORY_URI} ${PYTHON_VERSION}-${POETRY_HASH} build
node 11-alpine build

dockerfiles/web-base/Dockerfile docker

base latest build
python ${PYTHON_VERSION}-slim-bullseye build

poetry.lock pypi

185 dependencies

pyproject.toml pypi

amass * develop
django-capture-on-commit-callbacks * develop
django-debug-toolbar * develop
factory-boy * develop
pytest-cov * develop
pytest-django * develop
pytest-mock * develop
pytest-randomly * develop
pytest-xdist * develop
sphinx * develop
sphinx-autobuild * develop
sphinx-autodoc-typehints * develop
sphinx-rtd-theme * develop
sphinxcontrib-django * develop
sphinxcontrib-plantuml * develop
watchfiles * develop
werkzeug * develop
Pillow *
Pygments *
aws-xray-sdk *
bleach *
boto3 >1.18.8
brotli *
celery !=5.0.6
citeproc-py *
disposable-email-domains *
django <3.3
django-activity-stream *
django-add-default-value *
django-allauth *
django-allauth-2fa *
django-autocomplete-light *
django-celery-beat !=1.6.0
django-celery-email *
django-celery-results !=2.4.0
django-cors-headers *
django-countries *
django-crispy-forms *
django-deprecate-fields *
django-extensions *
django-filter *
django-forms-dynamic *
django-guardian !=2.2.0
django-haystack *
django-ipware *
django-machina *
django-markdownx *
django-permissions-policy *
django-redis *
django-select2 *
django-ses *
django-simple-history *
django-stdimage *
django-storages >=1.13.1
django-summernote *
django_rest_knox *
djangorestframework *
djangorestframework-csv *
djangorestframework-guardian *
drf-spectacular *
gunicorn *
humanize *
jinja2 *
jsonschema *
openpyxl *
panimg >=0.9.0
psycopg2 *
pyswot *
python >=3.10,<3.11
python-magic *
pytz *
requests *
sentry-sdk *
tldextract *
ua-parser *
uvicorn *
whitenoise *

docker-compose.yml docker

ecosyste.ms

Data

Tools

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Experiments

Open Source Science

grand-challenge.org

Science Score: 64.0%

Keywords

Keywords from Contributors

Repository

Basic Info

Statistics

Topics

Metadata Files

README.md

grand-challenge.org

Owner

Citation (CITATION.cff)

Committers

All Time

Top Committers

Committer Domains (Top 20 + Academic)

Issues and Pull Requests

All Time

Past Year

Top Authors

Issue Authors

Pull Request Authors

Top Labels

Issue Labels

Pull Request Labels

Dependencies