slicerneurosegmentation
NeuroSegmentation extension for 3D Slicer
Science Score: 67.0%
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Keywords
Repository
NeuroSegmentation extension for 3D Slicer
Basic Info
Statistics
- Stars: 16
- Watchers: 3
- Forks: 2
- Open Issues: 8
- Releases: 4
Topics
Metadata Files
README.md
SlicerNeuroSegmentation: HOA 2.0 Neurosegmentation And Neuroparcellation
SlicerNeuroSegmentation is an extension for 3D Slicer designed to provide access to tools for segmenting neurological structures.
Modules
NeuroSegment
This module provides access to tools for editing MRI images. Segments that are created using the module are automatically populated with the structures that need to be segmented.
NeuroSegment Parcellation
This module provides tools that facilitate the segmentation of structures in the cerebral cortex by defining planes and tracing along sulci that are represented 3D mesh imported from FreeSurfer.
Curve Comparison
This module evaluates the curve surface pathfinding parameters to find the parameters that perform optimally compared to a ground truth curve.
User guides
Neurosegmentation
The manual for performing segmentations with the Neurosegmentation module is located here.
Neuroparcellation
Instructions on the workflow using the Neuroparcellation module can be found here.
Additional information on the interface can be found here.
Support
If you encounter any issues or have any questions, feel free to submit an issue here.
Citation
Rushmore R.J., Sunderland, K., Carrington H., Chen J., Halle M., Lasso A., Papadimitriou G., Prunier N., Rizzoni E., Vessey B., Wilson-Braun P., Rathi Y., Kubicki M., Bouix S., Yeterian E. and Makris N. (2022) Anatomically curated segmentation of human subcortical structures in high resolution magnetic resonance imaging: An open science approach. Front. Neuroanat. 16:894606. doi:10.3389/fnana.2022.894606
Acknowledgements
Development of SlicerNeuroSegmentation was partially funded by Brigham and Women's Hospital through NIH grant R01MH112748
Owner
- Name: Harvard Oxford Atlas 2.0
- Login: HOA-2
- Kind: organization
- Repositories: 3
- Profile: https://github.com/HOA-2
High Resolution, Comprehensive Atlases of the Human Brain Morphology
Citation (CITATION.cff)
cff-version: 1.1.0
title: "SlicerNeuroSegmentation: HOA 2.0 Neurosegmentation And Neuroparcellation"
message: "If you use this software, please cite it as below."
type: software-code
authors:
- given-names: Kyle
family-names: Sunderland
email: 1krs1@queensu.ca
- given-names: R. Jarrett
family-names: Rushmore
email: rushmore@bu.edu
- given-names: Andras
family-names: Lasso
email: lasso@queensu.ca
- given-names: Sylvain
family-names: Bouix
email: sylvain@bwh.harvard.edu
url: 'https://github.com/HOA-2/SlicerNeuroSegmentation'
repository: 'https://github.com/HOA-2/SlicerNeuroSegmentation'
version: 0.9.0
doi: 10.5281/zenodo.7055171
date-released: 2022-09-06
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