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nad-ciprofloxacin_mixtures_hayes2025

Code and data for the paper Hayes et al., 2025

https://github.com/ahayyes/nad-ciprofloxacin_mixtures_hayes2025

Science Score: 57.0%

This score indicates how likely this project is to be science-related based on various indicators:

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    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
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    .zenodo.json file
    Found .zenodo.json file
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    DOI references
    Found 2 DOI reference(s) in README
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    Academic publication links
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    Institutional organization owner
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    JOSS paper metadata
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    Scientific vocabulary similarity
    Low similarity (5.8%) to scientific vocabulary
Last synced: 10 months ago · JSON representation ·

Repository

Code and data for the paper Hayes et al., 2025

Basic Info
  • Host: GitHub
  • Owner: ahayyes
  • Default Branch: main
  • Homepage:
  • Size: 103 KB
Statistics
  • Stars: 0
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 2
Created over 1 year ago · Last pushed about 1 year ago
Metadata Files
Readme Citation

README.md

Common non-antibiotic drugs enhance selection for antimicrobial resistance in mixture with ciprofloxacin

Non-sequencing data for the paper Hayes et al., 2025

  • DOI of the paper on biorxiv: https://doi.org/10.1101/2025.03.23.644574
  • Sequence data is deposited at ENA - Accession Number PRJEB88784.
  • All other data is deposited here as part of this repository and deposited on Zenodo image

Outline

This repository contains the datasets, analysed as part of the study in the manuscript 'Common non-antibiotic drugs enhance selection for antimicrobial resistance in mixture with ciprofloxacin'. It contains the growth OD readings, and qPCR data. It will contain the code used to analyse these upon acceptance in a peer-reviewed journal.

The code for running the bioinformatics pipelines are not present here, but can be run with default parameters. In this study we used AMR++ to anlayse the metagenome data. AMR++ is well supported by a GitHub repository - https://github.com/Microbial-Ecology-Group/AMRplusplus.

Owner

  • Name: A Hayes
  • Login: ahayyes
  • Kind: user

postdoc at the University of Exeter, interested in amr and microbial ecology

Citation (CITATION.cff) 

cff-version: 1.0
message: If you use this software, please cite it as below.
title: "Data for: Common non-antibiotic drugs enhance selection for antimicrobial resistance in mixture with ciprofloxacin
authors:
- family-names: "April"
  given-names: "Hayes"
  orcid: "https://orcid.org/0000-0002-0293-34322"
version: 1.0
doi: 10.5281/zenodo.15324016
date-released: "02-05-2024"
repository data: "https://github.com/ahayyes/NAD-ciprofloxacin_mixtures_Hayes2025"

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Last Year
  • Release event: 2
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  • Public event: 1
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