Recent Releases of the-real-genotools
the-real-genotools - v1.3.5
What's Changed
- update containerized model to match API by @mkoretsky1 in https://github.com/dvitale199/GenoTools/pull/204
- Sexcheck by @dvitale199 in https://github.com/dvitale199/GenoTools/pull/206
Full Changelog: https://github.com/dvitale199/GenoTools/compare/v1.3.4...v1.3.5
- Python
Published by dvitale199 10 months ago
the-real-genotools - v1.3.4
Full Changelog: https://github.com/dvitale199/GenoTools/compare/v1.3.3...v1.3.4
- Python
Published by dvitale199 11 months ago
the-real-genotools - v1.3.3
What's Changed
- het prune before related prune in main pipeline by @mkoretsky1 in https://github.com/dvitale199/GenoTools/pull/203
- copy files when no related pruning occurs by @mkoretsky1 in https://github.com/dvitale199/GenoTools/pull/205
Full Changelog: https://github.com/dvitale199/GenoTools/compare/v1.3.2...v1.3.3
- Python
Published by dvitale199 11 months ago
the-real-genotools - v1.3.2
What's Changed
- Update README.md by @dvitale199 in https://github.com/dvitale199/GenoTools/pull/201
Full Changelog: https://github.com/dvitale199/GenoTools/compare/v1.3.1...v1.3.2
- Python
Published by dvitale199 about 1 year ago
the-real-genotools - v1.3.1
What's Changed
- Update README.md by @dvitale199 in https://github.com/dvitale199/GenoTools/pull/197
- Update README.md by @dvitale199 in https://github.com/dvitale199/GenoTools/pull/198
- Update README.md by @dvitale199 in https://github.com/dvitale199/GenoTools/pull/199
Full Changelog: https://github.com/dvitale199/GenoTools/compare/v1.3.0...v1.3.1
- Python
Published by dvitale199 about 1 year ago
the-real-genotools - v1.3.0
What's Changed
- Update qc.py by @dvitale199 in https://github.com/dvitale199/GenoTools/pull/187
- het typo by @sammyhong23 in https://github.com/dvitale199/GenoTools/pull/188
- Update documentation by @nvk23 in https://github.com/dvitale199/GenoTools/pull/189
- error catching and tmpdir pipeline fixes by @mkoretsky1 in https://github.com/dvitale199/GenoTools/pull/190
- move process complete for HWE so its not always True by @mkoretsky1 in https://github.com/dvitale199/GenoTools/pull/191
- AMR het prune update by @mkoretsky1 in https://github.com/dvitale199/GenoTools/pull/192
- ancestry-only tmpdir bug fix by @mkoretsky1 in https://github.com/dvitale199/GenoTools/pull/193
- all samp/var QC'd bug fix by @mkoretsky1 in https://github.com/dvitale199/GenoTools/pull/194
- fix assoc pipeline error by @mkoretsky1 in https://github.com/dvitale199/GenoTools/pull/195
- adding option to maf prune during lambda calculation by @mkoretsky1 in https://github.com/dvitale199/GenoTools/pull/196
Full Changelog: https://github.com/dvitale199/GenoTools/compare/v1.2.4...v1.3.0
- Python
Published by dvitale199 over 1 year ago
the-real-genotools - v1.2.4
What's Changed
- check for abspath for concat_logs for relative path execution by @dvitale199 in https://github.com/dvitale199/GenoTools/pull/186
Full Changelog: https://github.com/dvitale199/GenoTools/compare/v1.2.3...v1.2.4
- Python
Published by dvitale199 over 1 year ago
the-real-genotools - v1.2.3
What's Changed
- Update README.md by @dvitale199 in https://github.com/dvitale199/GenoTools/pull/177
- separate ancestry from execute_pipeline by @mkoretsky1 in https://github.com/dvitale199/GenoTools/pull/179
- Update README.md by @dvitale199 in https://github.com/dvitale199/GenoTools/pull/181
- Update cli_args.md by @dvitale199 in https://github.com/dvitale199/GenoTools/pull/182
- Related by @dvitale199 in https://github.com/dvitale199/GenoTools/pull/184
- updated het to +/-0.15 by @dvitale199 in https://github.com/dvitale199/GenoTools/pull/185
Full Changelog: https://github.com/dvitale199/GenoTools/compare/v1.2.2...v1.2.3
- Python
Published by dvitale199 over 1 year ago
the-real-genotools - v1.2.2
Full Changelog: https://github.com/dvitale199/GenoTools/compare/v1.2.1...v1.2.2
- Python
Published by dvitale199 almost 2 years ago
the-real-genotools - v1.0.1
What's Changed
- if statements to check if outputs from hap and hwe variant pruning cr… by @dvitale199 in https://github.com/dvitale199/GenoTools/pull/144
- updated warnings to stacklevel=2 by @dvitale199 in https://github.com/dvitale199/GenoTools/pull/145
Full Changelog: https://github.com/dvitale199/GenoTools/compare/v1.0.0...v1.0.1
- Python
Published by dvitale199 about 2 years ago