Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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✓Academic publication links
Links to: zenodo.org -
○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (16.4%) to scientific vocabulary
Keywords
package
r
uk-biobank
Last synced: 9 months ago
·
JSON representation
Repository
R package for UK Biobank data wrangling.
Basic Info
- Host: GitHub
- Owner: rmgpanw
- License: other
- Language: R
- Default Branch: main
- Homepage: https://rmgpanw.github.io/ukbwranglr/
- Size: 4.68 MB
Statistics
- Stars: 20
- Watchers: 2
- Forks: 1
- Open Issues: 3
- Releases: 2
Topics
package
r
uk-biobank
Created over 5 years ago
· Last pushed about 2 years ago
Metadata Files
Readme
Contributing
License
Codemeta
README.Rmd
---
output:
github_document
---
```{r, include = FALSE}
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>",
fig.path = "man/figures/README-",
out.width = "100%"
)
# copy and paste this next to '# ukbwranglr' below to include hex badge
# 
```
# ukbwranglr
[](https://github.com/rmgpanw/ukbwranglr/actions) [](https://codecov.io/gh/rmgpanw/ukbwranglr?branch=main) [](https://github.com/rmgpanw/ukbwranglr/actions) [](https://rstudio.cloud/project/2528744) [](https://zenodo.org/badge/latestdoi/308650225) [](https://www.repostatus.org/#wip)
# Overview
The goal of ukbwranglr is to facilitate analysing UK Biobank data, including:
1. Reading a selection of UK Biobank variables into R.
2. Summarising repeated continuous variable measurements.[^1]
3. Extracting phenotypic outcomes of interest from clinical events data.[^2]
[^1]: For example, calculating a mean/minimum/maximum body mass index (BMI) from repeated BMI measurements.
[^2]: For example, identifying participants with a diagnosis of hypertension from linked primary and secondary health care records.
# Installation
You can install the development version of ukbwranglr with:
```{r eval=FALSE}
# install.packages("devtools")
devtools::install_github("rmgpanw/ukbwranglr")
```
# Basic workflow
The basic workflow is as follows:
1. Create a data dictionary for your main UK Biobank dataset with `make_data_dict()`.
2. Read selected variables into R with `read_ukb()`.
3. Summarise continuous variables with `summarise_numerical_variables()`.
4. Tidy clinical events data with `tidy_clinical_events()` or `make_clinical_events_db()`, and extract outcomes of interest with `extract_phenotypes()`.
5. Analyse.
Please see `vignette('ukbwranglr')` for further details.
Owner
- Login: rmgpanw
- Kind: user
- Repositories: 1
- Profile: https://github.com/rmgpanw
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Total
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Last Year
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Dependencies
DESCRIPTION
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