bamtocov -

• bamtocounts now supports --paired to count fragments
• bamtocounts fixed a bug that ignored the user flag to exclude
• [EXPERIMENTAL] testing --extendRead INT in bamtocov #6

- Nim
Published by telatin almost 4 years ago

bamtocov - v2.6.1 bugfix

• Compilation settings fixed to prevent crashes on certain systems

- Nim
Published by telatin about 4 years ago

bamtocov - v2.6.0

• bamtocounts algorithm rewritten to accept unsorted and non-indexed files. the requirement for indexed files will be permanently dropped, for consistency across the suite, while we recommend using sorted files, and, in the future, this requirement might be added again to allow for performance gains.

- Nim
Published by telatin about 4 years ago

bamtocov - v2.5.0 - Counts

• BamToCounts now uses the shared methods from BamToCov to manage the target (initially it used Lapper)

- Nim
Published by telatin about 4 years ago

bamtocov - v2.4.0 - Stranded Wiggles

• Added support for --stranded analysis and Wiggle-like output (an extra column will be printed)

- Nim
Published by telatin about 4 years ago

bamtocov - v2.3.0 Wig Output

• Improved Wig output
• Added Makefile
• Improved test suite

- Nim
Published by telatin about 4 years ago

bamtocov - v2.2.0

• Experimental Wig output

- Nim
Published by telatin over 4 years ago

bamtocov - v2.1.0

- Nim
Published by telatin over 4 years ago

bamtocov - 2.0.4

- Nim
Published by telatin almost 5 years ago

bamtocov - 2.0.2 target support

- Nim
Published by telatin about 5 years ago

bamtocov - 2.0.001

• Added bamcountrefs

- Nim
Published by telatin about 5 years ago

bamtocov - 2.0.000

- Nim
Published by telatin about 5 years ago