packages
Aim to be the bioinformatics repository with more and newer packages https://doi.org/10.1093/bioinformatics/btaf106
Science Score: 49.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
○CITATION.cff file
-
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 4 DOI reference(s) in README -
○Academic publication links
-
✓Committers with academic emails
2 of 21 committers (9.5%) from academic institutions -
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (9.8%) to scientific vocabulary
Keywords
Repository
Aim to be the bioinformatics repository with more and newer packages https://doi.org/10.1093/bioinformatics/btaf106
Basic Info
- Host: GitHub
- Owner: BioArchLinux
- License: agpl-3.0
- Language: Shell
- Default Branch: master
- Homepage: https://bioarchlinux.org/packages
- Size: 121 MB
Statistics
- Stars: 95
- Watchers: 8
- Forks: 12
- Open Issues: 5
- Releases: 0
Topics
Metadata Files
README.md
BioArchLinux
Packages Wiki Matrix Mirror Repo Status
Special sponsor
Usage
ArchLinux and ArchLinux based distributions
Add the following content to the /etc/pacman.conf
[bioarchlinux]
Server = https://repo.bioarchlinux.org/$arch
You can replace the https://repo.bioarchlinux.org/$arch with any mirror in mirrorlist
install GPG keyring to use bioarchlinux ```
pacman-key --recv-keys B1F96021DB62254D
pacman-key --finger B1F96021DB62254D
pacman-key --lsign-key B1F96021DB62254D
```
update the database ```
pacman -Syu
```
install any package ```
pacman -S foo
```
Windows
You can use WSL to use our repo, see here
Docker
You can use docker to use our repo, see here
ISO
You can use ISO image via virtual machine software to use our repo, see here
non-root Linux users
You can use junest BioArchLinux image to use our repo, see here
Citation
Zhang G, Ristola P, Su H, Kumar B, Zhang B, Hu Y, Elliot MG, Drobot V, Zhu J, Staal J, Larralde M, Wang S, Yi Y, Yu H. 2025. BioArchLinux: community-driven fresh reproducible software repository for life science. Bioinformatics: btaf106. https://doi.org/10.1093/bioinformatics/btaf106
Zhang G, Hu Y, Drobot V, Staal J, Yi Y, Elliot MG. 2022. BioArchLinux: bioinformatics community with Arch Linux. F1000Research 11: 809. https://doi.org/10.7490/f1000research.1119039.1
Submitting packages
Those wishing to submit 'PKGBUILD' for packages to repo please refer to adding packages document
Owner
- Name: BioArchLinux
- Login: BioArchLinux
- Kind: organization
- Website: https://BioArchLinux.org
- Repositories: 7
- Profile: https://github.com/BioArchLinux
Arch Community for Biologists & Arch Repository for Biological Software
GitHub Events
Total
- Create event: 3
- Commit comment event: 29
- Issues event: 31
- Watch event: 14
- Delete event: 2
- Issue comment event: 125
- Push event: 1,622
- Pull request review event: 15
- Pull request review comment event: 6
- Pull request event: 93
- Fork event: 5
Last Year
- Create event: 3
- Commit comment event: 29
- Issues event: 31
- Watch event: 14
- Delete event: 2
- Issue comment event: 125
- Push event: 1,622
- Pull request review event: 15
- Pull request review comment event: 6
- Pull request event: 93
- Fork event: 5
Committers
Last synced: 9 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| BioArchLinuxBot | b****x@m****t | 56,214 |
| Kuoi | s****e@o****m | 2,877 |
| Pekka Ristola | p****r@p****m | 1,829 |
| sukanka | s****7@g****m | 420 |
| bipin kumar | k****r | 371 |
| Shun Wang | s****g@g****m | 122 |
| Kuoi | g****t@m****t | 88 |
| Kiri | 1****2 | 47 |
| Butui Hu | h****3@g****m | 27 |
| Mick Elliot | m****t@r****l | 19 |
| Viktor Drobot | l****6@g****m | 8 |
| Martin Larralde | m****e@e****e | 6 |
| alienzj | a****j@g****m | 5 |
| sukanka | s****m | 5 |
| Jens Staal | s****8@g****m | 4 |
| AmirAli Dashti | d****1@g****m | 4 |
| Kashyap Chhatbar | k****c@g****m | 2 |
| lilydjwg | l****g@g****m | 2 |
| Ambu Vijayan | 8****n | 1 |
| Bipin Kumar | b****n@c****n | 1 |
| Xeonacid | h****w@g****m | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 82
- Total pull requests: 101
- Average time to close issues: 21 days
- Average time to close pull requests: 4 days
- Total issue authors: 17
- Total pull request authors: 14
- Average comments per issue: 3.32
- Average comments per pull request: 1.87
- Merged pull requests: 84
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 17
- Pull requests: 64
- Average time to close issues: 3 days
- Average time to close pull requests: about 12 hours
- Issue authors: 9
- Pull request authors: 10
- Average comments per issue: 2.29
- Average comments per pull request: 1.23
- Merged pull requests: 52
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- starsareintherose (39)
- sukanka (9)
- shun2wang (9)
- kbipinkumar (8)
- llity (4)
- major-mayer (3)
- pekkarr (2)
- staalmannen (2)
- michaelgelliot (2)
- Kiri2002 (2)
- Aleksanaa (1)
- carlosal1015 (1)
- markstukel (1)
- IrshadUlHaq1 (1)
- hubutui (1)
Pull Request Authors
- shun2wang (55)
- kbipinkumar (20)
- Kiri2002 (16)
- sukanka (13)
- althonos (8)
- kashyapchhatbar (8)
- starsareintherose (6)
- alienzj (5)
- michaelgelliot (3)
- amirali-dashti (3)
- Xeonacid (2)
- staalmannen (2)
- hubutui (1)
- ambuvjyn (1)