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colloid-tracking

Scripts for tracking colloids. Via NSF, CMU, FIU.

https://github.com/jorbdehmel/colloid-tracking

Science Score: 44.0%

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    Low similarity (8.3%) to scientific vocabulary
Last synced: 6 months ago · JSON representation ·

Repository

Scripts for tracking colloids. Via NSF, CMU, FIU.

Basic Info
  • Host: GitHub
  • Owner: jorbDehmel
  • License: mit
  • Language: Python
  • Default Branch: main
  • Homepage:
  • Size: 42 MB
Statistics
  • Stars: 1
  • Watchers: 2
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created over 2 years ago · Last pushed 6 months ago
Metadata Files
Readme License Citation Support

README.md

Resources for filtering Colloid data

Jordan Dehmel, 2023-2025, Colorado Mesa University

GitHub

Overview

Note: This repository will be orphaned in Fall '25! If you know python and use it, please take it over!

This repository contains code for the filtering of data surrounding the motion of Colloids, given that the data has been extracted via Speckle TrackerJ. These files aim to provide accurate filtering, as well as reasonable automation. There are also resources for the simplification of the workflow.

  • To test the speckle package (doesn't test scripts): make test
  • To launch a podman container: make podman
  • To launch a docker container: make docker

Usage

When in doubt, use the main.py script: This has a built-in guide for using it. It should be run before and after speckle tracking.

More documentation can be found in docs/.

Disclaimer

FOSS under the MIT license. Supported by NSF grant 2126451. Based upon work partially funded by Colorado Mesa University.

Owner

  • Name: Jorb Dehmel
  • Login: jorbDehmel
  • Kind: user
  • Location: Grand Junction, Colorado
  • Company: Colorado Mesa University

Student of computer science and mathematics, Python, C++, Rust, JavaScript. Pronunciation of my name: "Jord'n Dame-ull"

Citation (CITATION.cff) 

# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!

cff-version: 1.2.0
title: Colloid Tracking
message: >-
  This software represents a collation of Python scripts for the
  tracking and analysis of colloids. It mostly uses data output
  by SpeckleTrackerJ.
type: software
authors:
  - given-names: Jordan
    family-names: Dehmel
    email: jdehmel@outlook.com
    affiliation: Colorado Mesa University
    orcid: 'https://orcid.org/0009-0002-0982-8149'
repository-code: 'https://github.com/jorbDehmel/colloid-tracking'
keywords:
  - Colloid
  - Active matter
  - Molecular dynamics
  - Data analysis
license: MIT

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