bstfun

Miscellaneous collection of functions

https://github.com/mskcc-epi-bio/bstfun

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
  • codemeta.json file
    Found codemeta.json file
  • .zenodo.json file
    Found .zenodo.json file
  • DOI references
  • Academic publication links
  • Academic email domains
  • Institutional organization owner
  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (12.1%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Miscellaneous collection of functions

Basic Info
Statistics
  • Stars: 34
  • Watchers: 3
  • Forks: 24
  • Open Issues: 12
  • Releases: 36
Created over 6 years ago · Last pushed about 2 years ago
Metadata Files
Readme Changelog License Codemeta

README.Rmd

---
output: github_document
---



```{r, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)
```

# bstfun


[![Codecov test coverage](https://codecov.io/gh/MSKCC-Epi-Bio/bstfun/branch/main/graph/badge.svg)](https://app.codecov.io/gh/MSKCC-Epi-Bio/bstfun?branch=main)
[![R-CMD-check](https://github.com/MSKCC-Epi-Bio/bstfun/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/MSKCC-Epi-Bio/bstfun/actions/workflows/R-CMD-check.yaml)
[![test-coverage](https://github.com/MSKCC-Epi-Bio/bstfun/actions/workflows/test-coverage.yaml/badge.svg)](https://github.com/MSKCC-Epi-Bio/bstfun/actions/workflows/test-coverage.yaml)


A miscellaneous collection of functions to used by members of the Biostatistics Department at MSKCC. Functions in the {bstfun} package do not fall within the well-defined packages with more narrow scope used by the department. 

## Installation

Employees of MSKCC should install {bstfun} by installing the internal {biostatR} package.
Details at [biostatR.mskcc.org](https://github.mskcc.org/pages/datadojo/biostatR/index.html).

You can install the development version of {bstfun} with:

``` r
devtools::install_github("MSKCC-Epi-Bio/bstfun")
```


## Contributing

Thank you to all contributors, including:

[@ddsjoberg](https://github.com/ddsjoberg)
[@karissawhiting](https://github.com/karissawhiting)
[@stl2137](https://github.com/stl2137),
[@vertosie](https://github.com/vertosie),
[@jalavery](https://github.com/jalavery),
[@larmarange](https://github.com/larmarange),
[@slobaugh](https://github.com/slobaugh), 
[@leejasme](https://github.com/leejasme)

Owner

  • Name: Dept of Epidemiology and Biostatistics at MSKCC
  • Login: MSKCC-Epi-Bio
  • Kind: organization
  • Location: United States of America

CodeMeta (codemeta.json)

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        "@id": "https://cran.r-project.org",
        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=rlang"
    },
    "18": {
      "@type": "SoftwareApplication",
      "identifier": "starter",
      "name": "starter",
      "version": ">= 0.1.12",
      "provider": {
        "@id": "https://cran.r-project.org",
        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=starter"
    },
    "19": {
      "@type": "SoftwareApplication",
      "identifier": "stringr",
      "name": "stringr",
      "version": ">= 1.4.0",
      "provider": {
        "@id": "https://cran.r-project.org",
        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=stringr"
    },
    "20": {
      "@type": "SoftwareApplication",
      "identifier": "tibble",
      "name": "tibble",
      "version": ">= 3.0.3",
      "provider": {
        "@id": "https://cran.r-project.org",
        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=tibble"
    },
    "21": {
      "@type": "SoftwareApplication",
      "identifier": "tidyr",
      "name": "tidyr",
      "version": ">= 1.1.1",
      "provider": {
        "@id": "https://cran.r-project.org",
        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=tidyr"
    },
    "SystemRequirements": null
  },
  "fileSize": "514.06KB",
  "releaseNotes": "https://github.com/MSKCC-Epi-Bio/bstfun/blob/master/NEWS.md",
  "readme": "https://github.com/MSKCC-Epi-Bio/bstfun/blob/main/README.md",
  "contIntegration": [
    "https://github.com/MSKCC-Epi-Bio/bstfun/actions",
    "https://app.codecov.io/gh/MSKCC-Epi-Bio/bstfun?branch=main"
  ]
}

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Dependencies

.github/workflows/R-CMD-check.yaml actions
  • actions/checkout v2 composite
  • r-lib/actions/check-r-package v2 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/pkgdown.yaml actions
  • JamesIves/github-pages-deploy-action 4.1.4 composite
  • actions/checkout v2 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/pr-commands.yaml actions
  • actions/checkout v2 composite
  • r-lib/actions/pr-fetch v2 composite
  • r-lib/actions/pr-push v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/test-coverage.yaml actions
  • actions/checkout v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
DESCRIPTION cran
  • R >= 3.4 depends
  • broom >= 1.0.1 imports
  • broom.helpers >= 1.9.0 imports
  • cli >= 3.0.1 imports
  • dplyr >= 1.0.1 imports
  • forcats >= 0.5.0 imports
  • fs >= 1.4.2 imports
  • glue >= 1.4.1 imports
  • gt >= 0.7.0 imports
  • gtsummary >= 1.7.0 imports
  • here >= 1.0.1 imports
  • lifecycle >= 0.2.0 imports
  • lubridate >= 1.7.9 imports
  • purrr >= 0.3.4 imports
  • readr >= 1.3.1 imports
  • rlang >= 1.0.2 imports
  • rstudio.prefs >= 0.1.9 imports
  • starter >= 0.1.12 imports
  • stringr >= 1.4.0 imports
  • tibble >= 3.0.3 imports
  • tidyr >= 1.1.1 imports
  • Hmisc * suggests
  • binom * suggests
  • cmprsk >= 2.2.10 suggests
  • covr >= 3.5.0 suggests
  • flextable >= 0.5.10 suggests
  • forestplot >= 2.0.1 suggests
  • ggplot2 >= 3.3.5 suggests
  • ggtext >= 0.1.1 suggests
  • gtExtras >= 0.4.0 suggests
  • huxtable >= 5.4.0 suggests
  • kableExtra >= 1.3.4 suggests
  • knitr >= 1.33 suggests
  • labelled >= 2.8.0 suggests
  • magick >= 2.7.2 suggests
  • patchwork >= 1.1.1 suggests
  • pracma * suggests
  • readxl >= 1.3.1 suggests
  • renv >= 0.15.1 suggests
  • spelling >= 2.1 suggests
  • survey >= 4.1.1 suggests
  • survival * suggests
  • testthat >= 2.3.2 suggests
  • tidyverse >= 1.3.1 suggests
  • usethis >= 1.6.1 suggests
  • withr * suggests