speciesabundance - 2.1.1

2.1.1 - 2024/05/02

Changed

• Enabled checking for existence of database files in JSON Schema to avoid issues with staging non-existent files in Azure.

- Nextflow
Published by kylacochrane about 2 years ago

speciesabundance - 2.1.0

2.1.0 - 2024/05/01

Added

• The ability to handle errors that occur during quality trimming, alignment to selected database, and taxon abundance estimation. These errors will be reported in failure/failures_report.csv.

Changed

• Refined the calculations within the 'adjustbrackenforunclassifiedreads' function to ascertain the proportions of taxonomic abundances relative to the read values adjusted following Bracken's re-estimation of abundances.

- Nextflow
Published by kylacochrane about 2 years ago

speciesabundance - 2.0.0

2.0.0 - 2024/04/18

Added

• The initial release of phac-nml/speciesabundance as a Nextflow pipeline following nf-core standards.

Changed

• Migrated SpeciesAbundance to a Nextflow pipeline.
• Updated the SpeciesAbundance release version from 1 to 2 to reflect migration from the Galaxy-based pipeline.

- Nextflow
Published by kylacochrane about 2 years ago