PAAT - v1.0.0

The Physical Activity Analysis Toolbox (PAAT) is a versatile Python package designed to analyze physical activity data. It is used in research and health-related fields to process raw acceleration data collected from the hip. It supports importing, cleaning, and preprocessing raw data, and includes algorithms to classify time in bed and non wear time. Furthermore, it supports estimating various physical activity levels such as moderate-to-vigorous physical activity or sedentary behavior, with customizable thresholds from multiple metrics. These estimates can be aggregated and used for further statistical analysis or be used directly for more sophisticated physical activity pattern analysis. Additionally, PAAT is extensible, allowing users to add custom algorithms or modules, and it integrates well with other data analysis tools within the Python ecosystem.

Scientific Software - Peer-reviewed - PureBasic
Published by Trybnetic 8 months ago

PAAT - v1.0.0b10

What's Changed

• Update docs by @Trybnetic in https://github.com/Trybnetic/paat/pull/46
• Update readme by @Trybnetic in https://github.com/Trybnetic/paat/pull/47
• Fixes returning correct vector length in detect_time_in_bed_weitz2024 by @Trybnetic
• Adds JOSS paper by @Trybnetic in https://github.com/Trybnetic/paat/pull/54

Full Changelog: https://github.com/Trybnetic/paat/compare/v1.0.0b9...v1.0.0b10

Scientific Software - Peer-reviewed - PureBasic
Published by Trybnetic 8 months ago

PAAT - v1.0.0b9

What's Changed

• adds requirements.txt for Binder builts by @Trybnetic in https://github.com/Trybnetic/paat/pull/41
• Ports code and models to keras3 by @Trybnetic in https://github.com/Trybnetic/paat/pull/45

Full Changelog: https://github.com/Trybnetic/paat/compare/v1.0.0b8...v1.0.0b9

Scientific Software - Peer-reviewed - PureBasic
Published by Trybnetic 10 months ago

PAAT - v1.0.0b8

What's Changed

• fixes DeprecationWarnings by @Trybnetic in https://github.com/Trybnetic/paat/pull/37
• fixes python 3.12 error by @Trybnetic in https://github.com/Trybnetic/paat/pull/38
• adds MAD function by @Trybnetic in https://github.com/Trybnetic/paat/pull/30
• adds option to use pygt3x to read gt3x files by @Trybnetic in https://github.com/Trybnetic/paat/pull/29
• improves documentation by @Trybnetic in https://github.com/Trybnetic/paat/pull/39
• registers pytest slow marker by @Trybnetic in https://github.com/Trybnetic/paat/pull/40

Full Changelog: https://github.com/Trybnetic/paat/compare/v1.0.0b7...v1.0.0b8

Scientific Software - Peer-reviewed - PureBasic
Published by Trybnetic about 1 year ago

PAAT - v1.0.0b7

What's Changed

• Fix broken doi/zenodo link by @freddie-freeloader in https://github.com/Trybnetic/paat/pull/32
• Update io.py to change metadata dates into a more readable format by @claaslendt in https://github.com/Trybnetic/paat/pull/33
• fixes PerformanceWarning in detectnonweartimesyed2021 by @Trybnetic in https://github.com/Trybnetic/paat/pull/34

New Contributors

• @freddie-freeloader made their first contribution in https://github.com/Trybnetic/paat/pull/32
• @claaslendt made their first contribution in https://github.com/Trybnetic/paat/pull/33

Full Changelog: https://github.com/Trybnetic/paat/compare/v1.0.0b6...v1.0.0b7

Scientific Software - Peer-reviewed - PureBasic
Published by Trybnetic over 1 year ago

PAAT - paat v1.0.0b6

The physical activity analysis toolbox (PAAT) is a comprehensive toolbox to analyze raw acceleration data. We developed all code mainly for analyzing ActiGraph data (GT3X files) in large sample study settings where manual annotation and analysis is not feasible. Most functions come along with scientific papers describing the methodology in detail. Even though, the package was and is primarily develop for analyzing ActiGraph data, we warmly welcome contributions for other clinical sensors as well!

This is the first more or less stable release which will be uploaded to zenodo. This is still a beta release which might be subject to changes, but it is uploaded to allow reproducible usage nonetheless.

Scientific Software - Peer-reviewed - PureBasic
Published by Trybnetic over 1 year ago