metagenomics-workshop
Metagenomics Workshop Overview
Science Score: 64.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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✓DOI references
Found 8 DOI reference(s) in README -
✓Academic publication links
Links to: zenodo.org -
✓Committers with academic emails
9 of 77 committers (11.7%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (6.2%) to scientific vocabulary
Keywords
carpentries-lab
english
lesson
peer-reviewed
stable
Keywords from Contributors
alpha
carpentries-incubator
genome-mining
metagenomics
carpentries
bioinformatics
life-sciences
bioconductor
openscience
data-carpentry
Last synced: 6 months ago
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JSON representation
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Repository
Metagenomics Workshop Overview
Basic Info
- Host: GitHub
- Owner: carpentries-lab
- License: other
- Language: Python
- Default Branch: gh-pages
- Homepage: https://carpentries-lab.github.io/metagenomics-workshop/
- Size: 72.1 MB
Statistics
- Stars: 5
- Watchers: 4
- Forks: 20
- Open Issues: 2
- Releases: 2
Topics
carpentries-lab
english
lesson
peer-reviewed
stable
Created about 5 years ago
· Last pushed 12 months ago
Metadata Files
Readme
Contributing
License
Code of conduct
Citation
Authors
README.md
Metagenomics Workshop
Overview page of the Metagenomics Workshop that comprises four lessons:
- Project Organization and Management for Metagenomics
- Introduction to the Command Line for Metagenomics
- Introduction to R for Metagenomics
- Data Processing and Visualization for Metagenomics
Code of Conduct
All participants should agree to abide by The Carpentries Code of Conduct.
Maintainer(s)
Current maintainers of this lesson are
- Nelly Selem Mojica
- Claudia Zirion Martinez
- Aaron Espinosa Jaime
- Jose Abel Lovaco Flores
- Diego Garfias Gallegos
Authors
The Metagenomics workshop overview is authored and maintained by the community.
A list of contributors to the lesson can be found in AUTHORS
Citation
Please cite this repository as:
Claudia Zirión Martínez; Diego Garfias Gallegos; Tania Vanessa Arellano Fernández; Aarón Espinosa Jaime; Edder D Bustos Díaz; José Abel Lovaco Flores; Luis Gerardo Tejero Gómez; J Abraham Avelar Rivas; Nelly Sélem (March , 2023) A Data Carpentry- Style Metagenomics Workshop https://doi.org/10.5281/zenodo.7713368
Please cite our manuscript 
Acknowledgments
We thank UNAM for funding proyecto PAPIME "Desarrollo de material didáctico de Bioinformática con énfasis en metagenómica para las modalidades presencial y virtual"
Owner
- Name: The Carpentries Lab
- Login: carpentries-lab
- Kind: organization
- Repositories: 3
- Profile: https://github.com/carpentries-lab
Citation (CITATION)
Please cite as: Nelly Sélem Mojica; Diego Garfias Gallegos; Claudia Zirión Martínez; Jesús Abraham Avelar Rivas; Aaron Jaime Espinosa; Abel Lovaco Flores; Tania Vanessa Arellano Fernandez (2022, Jan). Metagenomics for Software Carpentry lesson, Jan 2022. Zenodo. https://doi.org/10.5281/zenodo.4285900
GitHub Events
Total
- Issues event: 2
- Watch event: 1
- Delete event: 1
- Issue comment event: 4
- Push event: 2
- Pull request event: 1
- Fork event: 3
Last Year
- Issues event: 2
- Watch event: 1
- Delete event: 1
- Issue comment event: 4
- Push event: 2
- Pull request event: 1
- Fork event: 3
Committers
Last synced: about 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Greg Wilson | g****n@t****m | 95 |
| Nelly Sélem | n****5@h****m | 84 |
| Claudia Zirión Martínez | 7****n | 83 |
| Erin Becker | e****r@g****m | 75 |
| François Michonneau | f****u@g****m | 74 |
| Raniere Silva | r****e@r****m | 65 |
| Tracy Teal | t****t@i****g | 28 |
| Raniere Silva | r****e@i****r | 24 |
| Abigail Cabunoc | a****c@o****a | 24 |
| Maxim Belkin | m****n@g****m | 21 |
| J. Abel Lovaco | 6****4 | 17 |
| Tracy Teal | t****l@g****m | 15 |
| Bob Freeman PhD | r****n@h****u | 14 |
| maneesha sane | m****e@g****m | 10 |
| Katrin Leinweber | 9****r | 8 |
| JasonJWilliamsNY | J****Y@g****m | 7 |
| Toby Hodges | t****s@g****m | 6 |
| aaronejaime | 4****e | 4 |
| Taylor Reiter | t****r@g****m | 4 |
| Camila Silva | 8****5 | 4 |
| Bianca Peterson | b****7@g****m | 4 |
| Rémi Emonet | r****t@r****e | 4 |
| Piotr Banaszkiewicz | p****r@b****g | 4 |
| David Mawdsley | d****y@m****k | 4 |
| AbrahamAvelar | j****r@g****m | 3 |
| Erin Becker | e****r@c****g | 3 |
| maneesha sane | a****m@g****m | 3 |
| William L. Close | w****e | 2 |
| Joseph Stachelek | j****a | 2 |
| James Allen | j****8@g****m | 2 |
| and 47 more... | ||
Committer Domains (Top 20 + Academic)
ime.unicamp.br: 2
third-bit.com: 1
rgaiacs.com: 1
idyll.org: 1
oicr.on.ca: 1
hbs.edu: 1
reverse--com.heeere: 1
banaszkiewicz.org: 1
manchester.ac.uk: 1
carpentries.org: 1
wisc.edu: 1
llnl.gov: 1
utoronto.ca: 1
otago.ac.nz: 1
drycafe.net: 1
software-carpentry.org: 1
tremily.us: 1
sesync.org: 1
asu.edu: 1
auckland.ac.nz: 1
ostatemail.okstate.edu: 1
brown.edu: 1
email.arizona.edu: 1
Issues and Pull Requests
Last synced: about 2 years ago
All Time
- Total issues: 2
- Total pull requests: 19
- Average time to close issues: about 2 hours
- Average time to close pull requests: 17 days
- Total issue authors: 2
- Total pull request authors: 8
- Average comments per issue: 1.0
- Average comments per pull request: 0.11
- Merged pull requests: 19
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 2
- Pull requests: 3
- Average time to close issues: about 2 hours
- Average time to close pull requests: 1 day
- Issue authors: 2
- Pull request authors: 2
- Average comments per issue: 1.0
- Average comments per pull request: 0.33
- Merged pull requests: 3
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- tobyhodges (3)
- fabel134 (1)
- kerchner (1)
Pull Request Authors
- tobyhodges (6)
- CamilaSilva1995 (4)
- AbrahamAvelar (3)
- fmichonneau (2)
- JasonJWilliamsNY (1)
- andrese52 (1)
- clarajegousse (1)
- nselem (1)
- lugetego (1)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
Gemfile
rubygems
- github-pages >= 0 development