molecularepidemiology_analysiswgs
https://github.com/aschuerch/molecularepidemiology_analysiswgs
Science Score: 44.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
-
✓DOI references
Found 1 DOI reference(s) in README -
○Academic publication links
-
○Academic email domains
-
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (4.5%) to scientific vocabulary
Keywords
Repository
Basic Info
- Host: GitHub
- Owner: aschuerch
- License: other
- Language: Python
- Default Branch: gh-pages
- Homepage: https://aschuerch.github.io/MolecularEpidemiology_AnalysisWGS/
- Size: 7.99 MB
Statistics
- Stars: 0
- Watchers: 3
- Forks: 4
- Open Issues: 1
- Releases: 0
Topics
Metadata Files
README.md
Computer practical for Molecular Epidemiology of Infectious Diseases
This lessons are part of a two weeks course directed at MSc and phD students following a non-bioinformatics curriculum. It aims to introduce students to the command line in order to use tools to analyse whole genome sequence data and showcases analyses methods such as SNP calling, pangenome analysis and clustering methods that have been introduced during the lectures. This computer practical uses data from this publication.
This lessons are partially based on the Data Carpentry Genomics lesson and are styled with the Software Carpentry lesson template which are made available under the (Creative Commons Attribution license](https://creativecommons.org/licenses/by/4.0/)
Owner
- Name: Anita Schürch
- Login: aschuerch
- Kind: user
- Location: The Netherlands
- Website: https://aschuerch.github.io/
- Repositories: 3
- Profile: https://github.com/aschuerch
Bioinformatician in pathogen genomics. Mostly over at her GitLab repos
Citation (CITATION)
Please cite as: 2018. Molecular Epidemiology Computer Practicum. University of Utrecht, the Netherlands
GitHub Events
Total
- Issues event: 2
- Delete event: 2
- Push event: 9
- Pull request event: 6
- Create event: 2
Last Year
- Issues event: 2
- Delete event: 2
- Push event: 9
- Pull request event: 6
- Create event: 2
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 3
- Total pull requests: 2
- Average time to close issues: almost 7 years
- Average time to close pull requests: 4 days
- Total issue authors: 1
- Total pull request authors: 1
- Average comments per issue: 0.67
- Average comments per pull request: 0.0
- Merged pull requests: 2
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 2
- Pull requests: 2
- Average time to close issues: N/A
- Average time to close pull requests: 4 days
- Issue authors: 1
- Pull request authors: 1
- Average comments per issue: 0.0
- Average comments per pull request: 0.0
- Merged pull requests: 2
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- aschuerch (2)
Pull Request Authors
- aschuerch (1)