shotgun-gutfish-prjna1254096 - Added Krona taxonomic visualization for PRJNA1254096

This version includes the Krona interactive taxonomic profile of the fish gut microbiota from PRJNA1254096 dataset.

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Published by somayehsarirchi 7 months ago

shotgun-gutfish-prjna1254096 - Initial release of Shotgun Fish Gut Metagenome

This is the initial release of a complete workflow for shotgun metagenomic analysis of fish gut microbiota (sample SRR33249106 from PRJNA1254096), based on Schizothorax biddulphi, native to the Kizil River (Xinjiang).

Key features: - Host decontamination with Kneaddata - Taxonomic profiling with Kraken2 + Bracken - Functional annotation using eggNOG-mapper - Visualization in R and Krona - Scripts and processed results included

See full documentation in the README.md

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Published by somayehsarirchi 7 months ago