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bayesiansumproductnetworks

Implementation of Bayesian Sum-Product Networks

https://github.com/trappmartin/bayesiansumproductnetworks

Science Score: 31.0%

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Repository

Implementation of Bayesian Sum-Product Networks

Basic Info
  • Host: GitHub
  • Owner: trappmartin
  • License: mit
  • Language: Julia
  • Default Branch: master
  • Size: 31.3 KB
Statistics
  • Stars: 13
  • Watchers: 2
  • Forks: 6
  • Open Issues: 3
  • Releases: 1
Created about 7 years ago · Last pushed about 6 years ago
Metadata Files
Readme License Citation

README.md

Bayesian Sum-Product Networks

This Julia package implements Bayesian Sum-Product Networks and infinite mixtures of Bayesian Sum-Product Networks. Besides all necessary core routines, this package additionally implements approximate Bayesian inference using a combination of ancestral and Gibbs sampling as well as an implementation of the distributed slice sampler for infinite mixtures of SPNs.

Note that this package requires Julia version >= 1.0.

To install the package and run the provided code, make sure to first install Julia from JuliaLang.org.

After starting Julia, you can install the package using Julia's internal package manager. To do so, press ] within the Julia command line to switch to the package manager prompt. You can leaf the package manager by pressing BACKSPACE.

To install the package, run the following command: julia pkg> add https://github.com/trappmartin/BayesianSumProductNetworks.git

Dataset and Predictions

All dataset and predictions can be found under: download

Running Experiments

To run the experiments, start the respective shell script located in the hpc folder. Those scripts are written such that they can be used as master scripts for slurm jobs.

API

All types and functions listed here contain doc-strings. Therefore, if you are interest in more details please about the use of those functions/types please use Julia's internal documentation system. Therefore, press ? within the Julia command line and then enter the name of the function/type you want to know more about.

The package implements Bayesian Sum-Product Networks using the following types:

julia RegionGraphNode{<:Real} <: AbstractRegionGraphNode PartitionGraphNode <: AbstractRegionGraphNode FactorizedDistributionGraphNode <: AbstractRegionGraphNode FactorizedMixtureGraphNode <: AbstractRegionGraphNode InfiniteSumNode NormalInverseGamma <: Distribution DirichletSufficientStats <: AbstractSufficientStats NormalInvGammaSufficientStats <: AbstractSufficientStats GammaSufficientStats <: AbstractSufficientStats BetaSufficientStats <: AbstractSufficientStats

For Bayesian inference the following functions are implemented:

julia randomscopes! templateRegion templatePartition ancestralsampling! gibbssamplescopes! slicesample! logpdf logpdf! logmllh!

License

The code is licensed under MIT License.

Citation

Please cite this work if you use it using the following CITATION.

Acknowledgement

This project received funding from the European Union's Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie Grant Agreement No. 797223 (HYBSPN).

Owner

  • Name: Martin Trapp
  • Login: trappmartin
  • Kind: user
  • Location: Europe
  • Company: Aalto University

Academy of Finland postdoctoral fellow at Aalto University.

Citation (CITATION) 

@inproceedings{trapp2019bayesian,
    title={Bayesian Learning of Sum-Product Networks},
    author={Martin Trapp and Robert Peharz and Hong Ge and Franz Pernkopf and Zoubin Ghahramani},
    year={2019},
    booktitle={Proceedings of Advances in Neural Information Processing Systems {NeurIPS}}
    }

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Dependencies

REQUIRE julia
  • AxisArrays *
  • Distributions 0.16.0
  • Reexport *
  • SpecialFunctions *
  • StatsBase *
  • StatsFuns *
  • julia 1.0