T cell family based

This project shows the sizes of different T cell families.

Usage

Download the folder and run the run_model file.

Project Structure

The project structure distinguishes three kinds of folders: - read-only (RO): not edited by either code or researcher - human-writeable (HW): edited by the researcher only. - project-generated (PG): folders generated when running the code; these folders can be deleted or emptied and will be completely reconstituted as the project is run.

. ├── .gitignore ├── CITATION.cff ├── LICENSE ├── README.md ├── requirements.txt ├── data <- All project data, ignored by git │ ├── processed <- The final, canonical data sets for modeling. (PG) │ ├── raw <- The original, immutable data dump. (RO) │ └── temp <- Intermediate data that has been transformed. (PG) ├── docs <- Documentation notebook for users (HW) │ ├── manuscript <- Manuscript source, e.g., LaTeX, Markdown, etc. (HW) │ └── reports <- Other project reports and notebooks (e.g. Jupyter, .Rmd) (HW) ├── results │ ├── figures <- Figures for the manuscript or reports (PG) │ └── output <- Other output for the manuscript or reports (PG) └── R <- Source code for this project (HW)

Session info

```
R version 4.3.2 (2023-10-31 ucrt) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 11 x64 (build 22621)

Matrix products: default

locale: [1] LCCOLLATE=DutchNetherlands.utf8 LCCTYPE=DutchNetherlands.utf8
[3] LCMONETARY=DutchNetherlands.utf8 LCNUMERIC=C
[5] LCTIME=Dutch_Netherlands.utf8

time zone: Europe/Amsterdam tzcode source: internal

attached base packages: [1] stats graphics grDevices datasets utils methods base

other attached packages: [1] plyr1.8.9 cowplot1.1.3 data.table1.15.0 magrittr2.0.3
[5] lubridate1.9.3 forcats1.0.0 stringr1.5.1 dplyr1.1.4
[9] purrr1.0.2 readr2.1.5 tidyr1.3.1 tibble3.2.1
[13] ggplot23.4.4 tidyverse2.0.0

loaded via a namespace (and not attached): [1] gtable0.3.4 compiler4.3.2 renv1.0.3 tidyselect1.2.0 [5] Rcpp1.0.11 scales1.3.0 R62.5.1 labeling0.4.3
[9] generics0.1.3 munsell0.5.0 pillar1.9.0 tzdb0.4.0
[13] rlang1.1.1 utf81.2.4 stringi1.7.12 timechange0.3.0 [17] cli3.6.1 withr3.0.0 grid4.3.2 rstudioapi0.15.0 [21] hms1.1.3 lifecycle1.0.4 vctrs0.6.5 glue1.6.2
[25] farver2.1.1 fansi1.0.6 colorspace2.1-0 tools4.3.2
[29] pkgconfig_2.0.3
```

Add a citation file

Create a citation file for your repository using cffinit

License

This project is licensed under the terms of the MIT License.