dbparser - dbparser 2.0.3

Enhancements

• Updated unit tests with latest DrugBank DB info v 5.1.12

Bugs Fixes

• Fixed "Drug Targets has two drugbank_id columns" bug (#163)

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Published by MohammedFCIS about 2 years ago

dbparser - dbparser 2.0.2

Enhancements

• Replaced "-" with "_" in tibbles column names (#111)
• Renamed "primarykey" to "drugbankid" in parsed drugs "general_information" tibble (#111)
• Replaced "parent_key" keywords in different tibbles column names with original parent name (#111)
• Updated Vignette to use interactive canvasXpress package plots

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Published by MohammedFCIS over 2 years ago

dbparser - dbparser 2.0.1

Breaking changes

• Deprecated saving parsed data into given database (#140)
• Deprecated saving parsed data into a csv file (#140)
• Deprecated old structure public methods (#141)
• Updated minimum R required version to 3.5 (#143)

New features

• Introduced new methods for paring DrugBank DB and returning dvobject (#141)

Major Updates

• Updated unit tests to work with new data structure (#141)

Minor Fixes

• Removed RMariaDB dependency (#129)

Bugs Fixes

• Fixed output references (#147)
• Updated parseDrugBanKparameters default values (#146)
• Fixed package documentation references (#144)
• Fixed CRAN error on some of linux info (#145)

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Published by MohammedFCIS about 3 years ago

dbparser - dbparser v1.2.0

• UI Changes

  • Introduce progress bar in parser functions

• New Parsers

  • Collective Parsers
  • drugs, cett and References Parsers
  • Elements Parsers
  • attachments parsers for drugs and CETT
  • drug_pharmacology parser
  • Rename drugsbooks parser to drugstextbooks
  • Rename drugall parser to runall_parsers
  • Rename drug parser to druggeneralinformation

• Documentation Update:

  • Add returned parsed data structure
  • Explain the returned data functionality as a whole and for each elements
  • Point out to related/similar parsers

• Package design

  • For those who thinking to contribute in dbparser, now parsers are implemented as R6 classes.

• Minor Fixes

  • Update database saver functions to accommodate new DrugBank data size.

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Published by MohammedFCIS almost 6 years ago

dbparser - dbparser v1.1.2

Major Changes

• Enhance many memory and performance issues for many parsers.
• Change the drug classification representations to extract more useful information. ### Minor Changes
• Change some drug tibbles features names ### DEFUNCT
• Size columns in drugs main table is no longer exist, will do full statistical analysis later using dvminer package.

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Published by MohammedFCIS about 6 years ago

dbparser - dbparser v1.1.1

dbparser 1.1.1

• Fix column size issue while importing into SQL Server (#91)
• Fix dbparser and upcoming CRAN release of dplyr issues (#92)
• Fix CRAN Notes (#93)
• Fix package documentation and site references

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Published by MohammedFCIS about 6 years ago

dbparser - dbparser 1.0.4

Fix save drugs dataframes as csv several issues Update sql database dataframes saver functions Update sql database saver functions documentations. Support MariaDB and introduce related functionalities.

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Published by MohammedFCIS almost 7 years ago

dbparser - v1.0.2

dbparser 1.0.2

• Fix zip file location issue
• Replace Secondary and third keys columns from drug framework with other_keys column that contains any other -
• keys that might exist in addition to the primary key
• Add average-mass, monoisotopic-mass and calculated-properties parsers.
• Support saving parsed drugs related parsed database as csv

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Published by MohammedFCIS almost 7 years ago

dbparser - v1.0.1

dbparser 1.0.1

• Fix CRAN Note
• Improve documentation
• Refactor unused functions
• Remove Count features from drug data set
• Fix serveral typoes in documentation and code
• Fix consistency issue of CLASS of Data Frames Returned by dbparser
• Check if drugbank database exist before parsing
• Add support for international_brands and salts elements
• Properly rename some features to have clear names
• Reduce datasets size by getting unique rows only
• Support reading zip file containing DrugBank xml database

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Published by MohammedFCIS about 7 years ago

dbparser -

First release of dbparser package that submitted to CRAN https://cran.r-project.org/web/packages/dbparser/index.html

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Published by MohammedFCIS over 7 years ago