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Open Source Science

chipseq

https://github.com/typekey/chipseq

Science Score: 13.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic links in README
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Unable to calculate vocabulary similarity
Last synced: 10 months ago · JSON representation

Repository

Basic Info
  • Host: GitHub
  • Owner: typekey
  • License: mit
  • Language: Nextflow
  • Default Branch: main
  • Size: 1.29 MB
Statistics
  • Stars: 0
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created over 1 year ago · Last pushed over 1 year ago
Metadata Files
Readme Changelog License Code of conduct Citation

Owner

  • Name: Lei Zheng
  • Login: typekey
  • Kind: user

GitHub Events

Total
  • Push event: 1
Last Year
  • Push event: 1

Dependencies

modules/nf-core/bowtie2/align/meta.yml cpan
modules/nf-core/bowtie2/build/meta.yml cpan
modules/nf-core/bwa/index/meta.yml cpan
modules/nf-core/bwa/mem/meta.yml cpan
modules/nf-core/chromap/chromap/meta.yml cpan
modules/nf-core/chromap/index/meta.yml cpan
modules/nf-core/custom/getchromsizes/meta.yml cpan
modules/nf-core/deeptools/computematrix/meta.yml cpan
modules/nf-core/deeptools/plotfingerprint/meta.yml cpan
modules/nf-core/deeptools/plotheatmap/meta.yml cpan
modules/nf-core/deeptools/plotprofile/meta.yml cpan
modules/nf-core/fastqc/meta.yml cpan
modules/nf-core/gffread/meta.yml cpan
modules/nf-core/gunzip/meta.yml cpan
modules/nf-core/homer/annotatepeaks/meta.yml cpan
modules/nf-core/khmer/uniquekmers/meta.yml cpan
modules/nf-core/macs3/callpeak/meta.yml cpan
modules/nf-core/multiqc/meta.yml cpan
modules/nf-core/phantompeakqualtools/meta.yml cpan
modules/nf-core/picard/collectmultiplemetrics/meta.yml cpan
modules/nf-core/picard/markduplicates/meta.yml cpan
modules/nf-core/picard/mergesamfiles/meta.yml cpan
modules/nf-core/preseq/lcextrap/meta.yml cpan
modules/nf-core/samtools/flagstat/meta.yml cpan
modules/nf-core/samtools/idxstats/meta.yml cpan
modules/nf-core/samtools/index/meta.yml cpan
modules/nf-core/samtools/sort/meta.yml cpan
modules/nf-core/samtools/stats/meta.yml cpan
modules/nf-core/subread/featurecounts/meta.yml cpan
modules/nf-core/trimgalore/meta.yml cpan
modules/nf-core/ucsc/bedgraphtobigwig/meta.yml cpan
modules/nf-core/umitools/extract/meta.yml cpan
modules/nf-core/untar/meta.yml cpan
modules/nf-core/untarfiles/meta.yml cpan
subworkflows/nf-core/bam_markduplicates_picard/meta.yml cpan
subworkflows/nf-core/bam_sort_stats_samtools/meta.yml cpan
subworkflows/nf-core/bam_stats_samtools/meta.yml cpan
subworkflows/nf-core/fastq_align_bowtie2/meta.yml cpan
subworkflows/nf-core/fastq_align_bwa/meta.yml cpan
subworkflows/nf-core/fastq_align_chromap/meta.yml cpan
subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/meta.yml cpan
subworkflows/nf-core/utils_nextflow_pipeline/meta.yml cpan
subworkflows/nf-core/utils_nfcore_pipeline/meta.yml cpan
subworkflows/nf-core/utils_nfvalidation_plugin/meta.yml cpan
modules/nf-core/bowtie2/align/environment.yml pypi
modules/nf-core/bowtie2/build/environment.yml pypi
modules/nf-core/bwa/index/environment.yml pypi
modules/nf-core/bwa/mem/environment.yml pypi
modules/nf-core/chromap/chromap/environment.yml pypi
modules/nf-core/chromap/index/environment.yml pypi
modules/nf-core/custom/getchromsizes/environment.yml pypi
modules/nf-core/deeptools/computematrix/environment.yml pypi
modules/nf-core/deeptools/plotfingerprint/environment.yml pypi
modules/nf-core/deeptools/plotheatmap/environment.yml pypi
modules/nf-core/deeptools/plotprofile/environment.yml pypi
modules/nf-core/fastqc/environment.yml pypi
modules/nf-core/gffread/environment.yml pypi
modules/nf-core/gunzip/environment.yml pypi
modules/nf-core/homer/annotatepeaks/environment.yml pypi
modules/nf-core/khmer/uniquekmers/environment.yml pypi
modules/nf-core/macs3/callpeak/environment.yml pypi
modules/nf-core/multiqc/environment.yml pypi
modules/nf-core/phantompeakqualtools/environment.yml pypi
modules/nf-core/picard/collectmultiplemetrics/environment.yml pypi
modules/nf-core/picard/markduplicates/environment.yml pypi
modules/nf-core/picard/mergesamfiles/environment.yml pypi
modules/nf-core/preseq/lcextrap/environment.yml pypi
modules/nf-core/samtools/flagstat/environment.yml pypi
modules/nf-core/samtools/idxstats/environment.yml pypi
modules/nf-core/samtools/index/environment.yml pypi
modules/nf-core/samtools/sort/environment.yml pypi
modules/nf-core/samtools/stats/environment.yml pypi
modules/nf-core/subread/featurecounts/environment.yml pypi
modules/nf-core/trimgalore/environment.yml pypi
modules/nf-core/ucsc/bedgraphtobigwig/environment.yml pypi
modules/nf-core/umitools/extract/environment.yml pypi
modules/nf-core/untar/environment.yml pypi
modules/nf-core/untarfiles/environment.yml pypi