ECG_MARKER

Install using PyPi

1. Install System Requirements

```bash sudo apt install python3-pip

sudo apt install python3-tk

sudo apt-get install python3-pil.imagetk ```

1. Install the latest version available on Pypi: https://pypi.org/project/ecg-marker/

bash pip install ecg-marker==x.x.x

Test Commands

1. Download the test files from the repository: https://github.com/SoaThais/ECG_MARKER/tree/main

2. For unprocessed files

bash python3 python3 -m ecg_marker -i ./input/ -f 0

1. For processed files

bash python3 python3 -m ecg_marker -i ./output/ecg_data.txt -r 0

Install source code on Windows

1. Enable WSL

Open PowerShell as administrator and run the following command to install WSL:

bash wsl --install

1. Install Ubuntu on WSL

After enabling WSL, open the Microsoft Store, search for Ubuntu (or another Linux distribution you prefer), and install it.

1. Update packages in Ubuntu

In the WSL terminal, run the following commands to update the system packages:

bash sudo apt update sudo apt upgrade

1. Install Miniconda:

bash wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh

bash bash Miniconda3-latest-Linux-x86_64.sh

bash source ~/.bashrc

1. Install and configure Git

bash sudo apt install git

bash git config --global user.name "your_name"

bash git config --global user.email "your_email@example.com"

1. Clone the repository and navigate to the project directory:

bash git clone git@github.com:SoaThais/ECG_MARKER.git

bash cd ECG_MARKER/

1. Create a Conda environment with the project dependencies

bash conda env create -f environment.yml

1. Activate the Conda environment

bash conda activate ecg_marker_env

1. Install the library

bash conda install -c conda-forge libxcb

Test Commands

1. For unprocessed files

bash python3 ./src/ecg_marker/ecg_marker.py -i ./input/ -f 0

1. For processed files

bash python3 ./src/ecg_marker/ecg_marker.py -i ./output/ecg_data.txt -r 0

Note

If a folder is used as input, name the files in the directory in alphabetical order.

Command line arguments

```bash -h, --help show this help message and exit

-i INPUT Input

-f INPUT_FILE Input File (1) or Input Directory (0)

-d OUTPUT_DIR Output Directory

-o OUTPUT_FILE Output File

--qrsfile QRSFILE Output file with QRS data

--qtfile QTFILE Output file with QT data

--velfile VELFILE Output file with estimated normalized velocity data

--arrhythmiafile ARRHYTHMIAFILE Output file with arrhythmia marking

--extrasystolefile EXTRASYSTOLEFILE Output file with extrasystole marking

--apdfile APDFILE Output file with estimated APD data

-r RAW_DATA Raw Data (1) or not (0) ```