bacqc-ont - v2.0.2

v2.0.2 - [18/06/2025]

Fixed

• Fix process.shell in nextflow.config (#3416)

- Nextflow
Published by avantonder 8 months ago

bacqc-ont - v2.0.1

v2.0.1 - [19/03/2025]

Fixed

• Documentation updated
• DOI generated with Zenodo

- Nextflow
Published by avantonder 11 months ago

bacqc-ont - v2.0.0.

v2.0.0 - [04/03/25]

• Significant recoding of pipeline to bring it more in line with current nf-core template.
• Add Krona to produce graphical outputs of Bracken results. Path to Krona Taxonomy file will have to be specified with --kronadb.
• Update FastQC from version 0.11.9 to version 0.12.1.
• Update nanoplot from version 1.41.0 to version 1.41.6
• Update Kraken 2 from version 2.1.2 to version 2.1.3.
• Update Bracken from version 2.7 to version 2.9.
• Update MultiQC from version 1.14 to version 1.25.1. Report now includes Bracken outputs and Kraken 2 outputs.

- Nextflow
Published by avantonder 12 months ago

bacqc-ont - v1.1

v1.1 - [01/02/24]

• Remove --brackendb parameter as redundant. Bracken will now use the database location specified with --krakendb.
• Documentation updated.

- Nextflow
Published by avantonder about 2 years ago

bacqc-ont - v1.0.0

v1.0.0 - [22/09/23]

Initial release of avantonder/bacQC-ONT, created with the nf-core template.

- Nextflow
Published by avantonder over 2 years ago