fluorescent-neuronal-cells
Fluorescent Neuronal Cells - 283 high-res images of mice brain slices from a fluorescence microscope
Science Score: 44.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
-
○Academic publication links
-
○Academic email domains
-
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (1.0%) to scientific vocabulary
Last synced: 9 months ago
·
JSON representation
·
Repository
Fluorescent Neuronal Cells - 283 high-res images of mice brain slices from a fluorescence microscope
Basic Info
- Host: GitHub
- Owner: dataset-ninja
- License: other
- Language: Python
- Default Branch: main
- Size: 12 MB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Created almost 3 years ago
· Last pushed 10 months ago
Metadata Files
Readme
License
Citation
README.md
Fluorescent Neuronal Cells
Fluorescent Neuronal Cells is a dataset for instance segmentation, semantic segmentation, and object detection tasks.
Owner
- Name: dataset-ninja
- Login: dataset-ninja
- Kind: organization
- Repositories: 1
- Profile: https://github.com/dataset-ninja
Citation (CITATION.md)
If you make use of the Fluorescent Neuronal Cells data, please cite the following reference:
```bibtex
@unpublished{amsacta6706,
title = {Fluorescent Neuronal Cells},
note = {Unpublished},
year = {2021},
publisher = {University of Bologna},
keywords = {semantic segmentation; object detection; object counting; neuronal cells; fluorescent microscopy},
author = {Clissa, Luca and Morelli, Roberto and Squarcio, Fabio and Hitrec, Timna and Luppi, Marco and Rinaldi, Lorenzo and Cerri, Matteo and Amici, Roberto and Bastianini, Stefano and Berteotti, Chiara and Lo Martire, Viviana and Martelli, Davide and Occhinegro, Alessandra and Tupone, Domenico and Zoccoli, Giovanna and Zoccoli, Antonio},
url = {https://amsacta.unibo.it/id/eprint/6706/},
abstract = {By releasing this dataset, we aim at providing a new testbed for computer vision techniques using Deep Learning. The main peculiarity is the shift from the domain of "natural images" proper of common benchmark dataset to biological imaging. We anticipate that the advantages of doing so could be two-fold: i) fostering research in biomedical-related fields - for which popular pre-trained models perform typically poorly - and ii) promoting methodological research in deep learning by addressing peculiar requirements of these images. Possible applications include but are not limited to semantic segmentation, object detection and object counting. The data consist of 283 high-resolution pictures (1600x1200 pixels) of mice brain slices acquired through a fluorescence microscope. The final goal is to individuate and count neurons highlighted in the pictures by means of a marker, so to assess the result of a biological experiment. The corresponding ground-truth labels were generated through a hybrid approach involving semi-automatic and manual semantic segmentation. The result consists of black (0) and white (255) images having pixel-level annotations of where the stained neurons are located. For more information, please refer to Morelli, R. et al., 2021. Automating cell counting in fluorescent microscopy through deep learning with c-ResUnet. Scientific reports, (in press). https://doi.org/10.1038/s41598-021-01929-5. The collection of original images was supported by funding from the University of Bologna (RFO 2018) and the European Space Agency (Research agreement collaboration 4000123556).}
}
```
[Source](http://amsacta.unibo.it/id/eprint/6706/)
GitHub Events
Total
- Push event: 2
Last Year
- Push event: 2
Dependencies
requirements.txt
pypi