treedistdata

Data and vignettes to accompany TreeDist packages

https://github.com/ms609/treedistdata

Science Score: 49.0%

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CITATION.cff file
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codemeta.json file
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.zenodo.json file
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DOI references
Found 3 DOI reference(s) in README
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Links to: zenodo.org
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Low similarity (10.2%) to scientific vocabulary

Last synced: 6 months ago · JSON representation

Repository

Data and vignettes to accompany TreeDist packages

Basic Info

Host: GitHub
Owner: ms609
Language: R
Default Branch: master
Homepage: https://ms609.github.io/TreeDistData/
Size: 341 MB

Statistics

Stars: 0
Watchers: 1
Forks: 1
Open Issues: 0
Releases: 2

Created over 6 years ago · Last pushed over 1 year ago

Metadata Files

Readme Changelog Contributing Code of conduct Codemeta

TreeDistData

'TreeDistData' is an R package intended to accompany the 'TreeDist' package. It contains the functions and scripts used to compare the performance of tree distance measures in Smith (2020).

"Articles" lists vignettes detailing the output of analyses corresponding to the stated sections of Smith (2020). Each of these pages includes a link to the R source code, which can be used to reproduce the analytical results.

"Reference" lists convenience functions, which facilitate calls to 'TreeDist', and data objects that store the results of lengthy analyses. The code used to generate these data objects is available in the data-raw directory.

References

Smith, M.R. (2020). Information theoretic Generalized Robinson-Foulds metrics for comparing phylogenetic trees. Bioinformatics 36: 5007–5013.

Owner

Name: Martin R. Smith
Login: ms609
Kind: user
Location: Durham, UK
Company: Department of Earth Sciences, Durham University

Website: https://orcid.org/0000-0001-5660-1727
Twitter: PalaeoSmith
Repositories: 21
Profile: https://github.com/ms609

Palaeontology & phylogenetics

CodeMeta (codemeta.json)

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Dependencies

DESCRIPTION cran

R >= 3.5.0 depends
Quartet * imports
TBRDist * imports
TreeDist >= 2.0.3.9002 imports
TreeTools >= 1.3.1.9000 imports
DT * suggests
MASS * suggests
Rdpack * suggests
TreeSearch >= 0.4.0 suggests
ape >= 5.5 suggests
benchmarkme * suggests
binom * suggests
bookdown * suggests
colorspace * suggests
kdensity * suggests
knitr * suggests
microbenchmark * suggests
phangorn >= 2.5.5 suggests
pkgdown * suggests
rmarkdown * suggests
spatstat * suggests
testthat * suggests

.github/workflows/pkgdown.yml actions

actions/cache v2 composite
actions/checkout v2 composite
r-lib/actions/setup-pandoc master composite
r-lib/actions/setup-r master composite

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