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pest-risk-decision

Code for our paper "Combining spatio-temporal pest risk prediction and decision theory to improve pest management in smallholder agriculture"

https://github.com/johanneskopton/pest-risk-decision

Science Score: 67.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 4 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: sciencedirect.com
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (9.8%) to scientific vocabulary
Last synced: 6 months ago · JSON representation ·

Repository

Code for our paper "Combining spatio-temporal pest risk prediction and decision theory to improve pest management in smallholder agriculture"

Basic Info
  • Host: GitHub
  • Owner: johanneskopton
  • Language: Jupyter Notebook
  • Default Branch: main
  • Size: 16 MB
Statistics
  • Stars: 2
  • Watchers: 1
  • Forks: 1
  • Open Issues: 0
  • Releases: 0
Created over 1 year ago · Last pushed 8 months ago
Metadata Files
Readme Citation

README.md

Model code and supplementary for pest risk decision paper

Full paper: "Combining spatio-temporal pest risk prediction and decision theory to improve pest management in smallholder agriculture"

@article{kopton2025, title = {Combining spatio-temporal pest risk prediction and decision theory to improve pest management in smallholder agriculture}, journal = {Computers and Electronics in Agriculture}, volume = {236}, pages = {110426}, year = {2025}, issn = {0168-1699}, doi = {https://doi.org/10.1016/j.compag.2025.110426}, url = {https://www.sciencedirect.com/science/article/pii/S0168169925005320}, author = {Johannes Kopton and Sytze {de Bruin} and Dario Schulz and Eike Luedeling}, }

Runnable code files:

Other code files for transparency (in auxiliary):

  • create_synthetic_dataset.ipynb for the creation of the synthetic dataset from the original non-public dataset
  • gee_extraction.ipynb for downloading the weather data from Google Earth Engine
  • population analysis.ipynb for the Monte Carlo simulation for assessing the community EVPI and possible benefits on community level
  • preprocess_weather_data.ipynb for processing the raw ECMWF/ERA5 weather data from GEE into 30-day time series to be used as covariates

example output

Owner

  • Name: Johannes Kopton
  • Login: johanneskopton
  • Kind: user
  • Location: Bonn
  • Company: @hortibonn

Cybernetics engineer 🦾 PhD student interested in multi-objective optimization, LCA 🌍️ and Bayesian modeling in bioeconomy and agriculture 🌱

Citation (CITATION.cff) 

date-released: "2025-01-01"
repository-code: "https://github.com/johanneskopton/pest-risk-decision/"
message: "If you use this software, please cite it as below."
doi: "https://doi.org/10.1016/j.compag.2025.110426"
title: "Combining spatio-temporal pest risk prediction and decision theory to improve pest management in smallholder agriculture"
cff-version: "1.2.0"
authors:
  - family-names: "Kopton"
    given-names: "Johannes"
  - family-names: "de Bruin"
    given-names: "Johannes"
  - family-names: "Schulz"
    given-names: "Dario"
  - family-names: "Luedeling"
    given-names: "Eike"
preferred-citation:
  type: "article"
  doi: "https://doi.org/10.1016/j.compag.2025.110426"
  url: "https://www.sciencedirect.com/science/article/pii/S0168169925005320"
  date-released: "2025-01-01"
  volume: "236"
  journal: "Computers and Electronics in Agriculture"
  title: "Combining spatio-temporal pest risk prediction and decision theory to improve pest management in smallholder agriculture"
  start: "110426"
  authors:
    - family-names: "Kopton"
      given-names: "Johannes"
    - family-names: "de Bruin"
      given-names: "Johannes"
    - family-names: "Schulz"
      given-names: "Dario"
    - family-names: "Luedeling"
      given-names: "Eike"

GitHub Events

Total
  • Watch event: 2
  • Push event: 3
  • Public event: 1
Last Year
  • Watch event: 2
  • Push event: 3
  • Public event: 1

Committers

Last synced: 8 months ago

All Time
  • Total Commits: 9
  • Total Committers: 1
  • Avg Commits per committer: 9.0
  • Development Distribution Score (DDS): 0.0
Past Year
  • Commits: 9
  • Committers: 1
  • Avg Commits per committer: 9.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Johannes Kopton j****s@k****g 9
Committer Domains (Top 20 + Academic)
kopton.org: 1

Issues and Pull Requests

Last synced: 8 months ago

All Time
  • Total issues: 0
  • Total pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Total issue authors: 0
  • Total pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
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