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caseologue

Validation tools for the EDAM ontology

https://github.com/edamontology/caseologue

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (4.9%) to scientific vocabulary

Keywords

continuous-integration ontology quality-control sparql-query
Last synced: 6 months ago · JSON representation

Repository

Validation tools for the EDAM ontology

Basic Info
  • Host: GitHub
  • Owner: edamontology
  • License: mit
  • Language: CSS
  • Default Branch: main
  • Homepage:
  • Size: 127 MB
Statistics
  • Stars: 1
  • Watchers: 6
  • Forks: 3
  • Open Issues: 7
  • Releases: 1
Topics
continuous-integration ontology quality-control sparql-query
Created almost 4 years ago · Last pushed about 1 year ago
Metadata Files
Readme Contributing License Code of conduct Codemeta

README.md

caseologue

caseologue is a set of tools used to ensure the consistency, coherence and stability of the EDAM ontology and its extensions.

caseologue controls use the ROBOT tool, running both standard and custom queries, as well as a custom python script. All these controls are implemented and usable as GitHub Actions. Detailed documentation is available here.

Owner

  • Name: EDAMontology
  • Login: edamontology
  • Kind: organization
  • Email: edam@elixir-dk.org

EDAMontology is an umbrella organisation for the development and maintenance of the EDAM ontology and related tools and works.

CodeMeta (codemeta.json) 

{
  "@context": "https://raw.githubusercontent.com/codemeta/codemeta/master/codemeta.jsonld",
  "@type": "Code",
  "identifier": "",
  "codeRepository": "https://github.com/edamontology/caseologue",
  "datePublished": "2022-12-13",
  "dateModified": "2022-12-13",
  "dateCreated": "2022-12-13",
  "description": "Caseologue is a set of tools used to ensure the consistency, coherence and stability of the EDAM ontology and its extensions.",
  "keywords": "Ontology, Standards, Continuous integration, FAIR research outputs, Quality control",
  "license": "MIT",
  "title": "Caseologue",
  "version": "v1.0.0"
}

GitHub Events

Total
  • Issues event: 2
  • Delete event: 1
  • Issue comment event: 3
  • Member event: 3
  • Push event: 1
  • Pull request review event: 1
  • Pull request event: 2
  • Create event: 2
Last Year
  • Issues event: 2
  • Delete event: 1
  • Issue comment event: 3
  • Member event: 3
  • Push event: 1
  • Pull request review event: 1
  • Pull request event: 2
  • Create event: 2

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 1
  • Total pull requests: 1
  • Average time to close issues: 1 day
  • Average time to close pull requests: 15 minutes
  • Total issue authors: 1
  • Total pull request authors: 1
  • Average comments per issue: 2.0
  • Average comments per pull request: 1.0
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 1
  • Average time to close issues: 1 day
  • Average time to close pull requests: 15 minutes
  • Issue authors: 1
  • Pull request authors: 1
  • Average comments per issue: 2.0
  • Average comments per pull request: 1.0
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • matuskalas (3)
Pull Request Authors
  • hmenager (1)
Top Labels
Issue Labels
duplicate (1) bug (1) help wanted (1) question (1)
Pull Request Labels

Dependencies

.github/workflows/build_docs.yml actions
  • actions/checkout master composite
  • actions/setup-python v2 composite
  • ad-m/github-push-action master composite
  • sphinx-notes/pages v2 composite
.github/workflows/caseologue_all_tests.yml actions
  • actions/checkout v2 composite
  • actions/upload-artifact v2 composite
.github/workflows/caseologue_error_essential.yml actions
  • actions/checkout v2 composite
  • actions/upload-artifact v2 composite
.github/workflows/caseologue_python.yml actions
  • actions/checkout v2 composite
  • actions/download-artifact v3 composite
  • actions/upload-artifact v2 composite
.github/workflows/caseologue_robot_reason.yml actions
  • actions/checkout v2 composite
  • actions/download-artifact v3 composite
.github/workflows/caseologue_robot_report.yml actions
  • actions/checkout v2 composite
  • actions/download-artifact v3 composite
  • actions/upload-artifact v2 composite
.github/workflows/test_caseologue.yml actions
  • actions/checkout v2 composite
webapp/Dockerfile docker
  • ubuntu 16.04 build
caseologue_python/requirements.txt pypi
  • argparse *
  • codespell *
  • lxml *
  • pandas *
  • rdflib *
  • tabulate *
docs/requirements.txt pypi
  • argparse *
  • lxml *
  • pandas *
  • rdflib *
  • sphinx-rtd-theme *
  • tabulate *
webapp/requirements.txt pypi
  • flask *
  • jupyter *
  • pandas *
  • rdflib *
  • requests *
  • seaborn *
  • sparqlwrapper *
.github/workflows/caseologue_curation.yml actions
  • actions/checkout v3 composite
  • actions/upload-artifact v3 composite