Data

Tools

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Applications

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Open Source Science

citecorp

Client for the Open Citations Corpus

https://github.com/ropensci/citecorp

Science Score: 39.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 2 DOI reference(s) in README
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (15.5%) to scientific vocabulary

Keywords

citations doi opencitations pmcid pmid r r-package rstats sparql
Last synced: 6 months ago · JSON representation

Repository

Client for the Open Citations Corpus

Basic Info
Statistics
  • Stars: 11
  • Watchers: 5
  • Forks: 4
  • Open Issues: 0
  • Releases: 4
Topics
citations doi opencitations pmcid pmid r r-package rstats sparql
Created about 7 years ago · Last pushed about 1 year ago
Metadata Files
Readme Changelog Contributing License Code of conduct Codemeta

README.Rmd 

---
title: citecorp
output: github_document
---

```{r echo=FALSE}
knitr::opts_chunk$set(
  comment = "#>",
  collapse = TRUE,
  warning = FALSE,
  message = FALSE
)
```



[![Project Status: Active - The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)
  [![R-CMD-check](https://github.com/ropensci/citecorp/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/ropensci/citecorp/actions/workflows/R-CMD-check.yaml)
[![rstudio mirror downloads](https://cranlogs.r-pkg.org/badges/citecorp)](https://github.com/metacran/cranlogs.app)
[![cran version](https://www.r-pkg.org/badges/version/citecorp)](https://cran.r-project.org/package=citecorp)
[![Codecov test coverage](https://codecov.io/gh/ropensci/citecorp/graph/badge.svg)](https://app.codecov.io/gh/ropensci/citecorp)


Client for the Open Citations Corpus http://opencitations.net/ (OCC)

OCC created their own identifiers called Open Citation Identifiers (oci), e.g., 

```
06180334099-06101759895
```

You are probably not going to be using oci identifiers, but rather DOIs and/or PMIDs
and/or PMCIDs. See `?oc_lookup` for methods for cross-walking among identifier types.

If you'd like to use the OpenCitations Sparql endpoint yourself you can find that
at http://opencitations.net/sparql


## Install

CRAN version

```{r eval=FALSE}
install.packages("citecorp")
```

Development version

```{r eval=FALSE}
remotes::install_github("ropensci/citecorp")
```

```{r}
library("citecorp")
```

## Methods for converting IDs

```{r}
oc_doi2ids("10.1039/c9sc00991d")
oc_pmid2ids("31857888")
oc_pmcid2ids("PMC6422012")
```

You can pass in more than one identifer to each of the above functions:

```{r}
oc_doi2ids(oc_dois[1:6])
```

## COCI methods

OpenCitations Index of Crossref open DOI-to-DOI references

If you don't load `tibble` you get normal data.frame's

```{r}
library(tibble)
doi1 <- "10.1108/jd-12-2013-0166"
# references
oc_coci_refs(doi1)
# citations
oc_coci_cites(doi1)
# metadata
oc_coci_meta(doi1)
```


## Meta

* Please [report any issues or bugs](https://github.com/ropensci/citecorp/issues)
* License: MIT
* Get citation information for `citecorp` in R doing `citation(package = 'citecorp')`
* Please note that this project is released with a [Contributor Code of Conduct][coc].
By participating in this project you agree to abide by its terms.

[sparqldsl]: https://github.com/ropensci/sparqldsl
[coc]: https://github.com/ropensci/citecorp/blob/master/CODE_OF_CONDUCT.md


[![rofooter](https://ropensci.org/public_images/github_footer.png)](https://ropensci.org)

Owner

  • Name: rOpenSci
  • Login: ropensci
  • Kind: organization
  • Email: info@ropensci.org
  • Location: Berkeley, CA

CodeMeta (codemeta.json) 

{
  "@context": [
    "https://doi.org/10.5063/schema/codemeta-2.0",
    "http://schema.org"
  ],
  "@type": "SoftwareSourceCode",
  "identifier": "citecorp",
  "description": "Client for the Open Citations Corpus (<http://opencitations.net/>).\n    Includes a set of functions for getting one identifier type from another,\n    as well as getting references and citations for a given identifier.",
  "name": "citecorp: Client for the Open Citations Corpus",
  "codeRepository": "https://github.com/ropensci/citecorp",
  "issueTracker": "https://github.com/ropensci/citecorp/issues",
  "license": "https://spdx.org/licenses/MIT",
  "version": "0.3.0",
  "programmingLanguage": {
    "@type": "ComputerLanguage",
    "name": "R",
    "url": "https://r-project.org"
  },
  "runtimePlatform": "R version 4.0.2 Patched (2020-06-30 r78761)",
  "author": [
    {
      "@type": "Person",
      "givenName": "Scott",
      "familyName": "Chamberlain",
      "email": "myrmecocystus@gmail.com",
      "@id": "https://orcid.org/0000-0003-1444-9135"
    }
  ],
  "contributor": {},
  "copyrightHolder": {},
  "funder": {},
  "maintainer": [
    {
      "@type": "Person",
      "givenName": "Scott",
      "familyName": "Chamberlain",
      "email": "myrmecocystus@gmail.com",
      "@id": "https://orcid.org/0000-0003-1444-9135"
    }
  ],
  "softwareSuggestions": [
    {
      "@type": "SoftwareApplication",
      "identifier": "testthat",
      "name": "testthat",
      "provider": {
        "@id": "https://cran.r-project.org",
        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=testthat"
    },
    {
      "@type": "SoftwareApplication",
      "identifier": "vcr",
      "name": "vcr",
      "provider": {
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        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=vcr"
    },
    {
      "@type": "SoftwareApplication",
      "identifier": "webmockr",
      "name": "webmockr",
      "provider": {
        "@id": "https://cran.r-project.org",
        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=webmockr"
    }
  ],
  "softwareRequirements": [
    {
      "@type": "SoftwareApplication",
      "identifier": "crul",
      "name": "crul",
      "version": ">= 0.7.0",
      "provider": {
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        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=crul"
    },
    {
      "@type": "SoftwareApplication",
      "identifier": "data.table",
      "name": "data.table",
      "provider": {
        "@id": "https://cran.r-project.org",
        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=data.table"
    },
    {
      "@type": "SoftwareApplication",
      "identifier": "fauxpas",
      "name": "fauxpas",
      "version": ">= 0.5.0",
      "provider": {
        "@id": "https://cran.r-project.org",
        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=fauxpas"
    },
    {
      "@type": "SoftwareApplication",
      "identifier": "jsonlite",
      "name": "jsonlite",
      "provider": {
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        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=jsonlite"
    }
  ],
  "applicationCategory": "Literature",
  "isPartOf": "https://ropensci.org",
  "keywords": [
    "doi",
    "metadata",
    "citation",
    "opencitations",
    "bibtex",
    "citations",
    "pmid",
    "pmcid",
    "sparql",
    "r",
    "r-package",
    "rstats"
  ],
  "readme": "https://github.com/ropensci/citecorp/blob/master/README.md",
  "fileSize": "0KB",
  "contIntegration": "https://travis-ci.com/ropensci/citecorp",
  "developmentStatus": "https://www.repostatus.org/#active",
  "releaseNotes": "https://github.com/ropensci/citecorp/blob/master/NEWS.md",
  "provider": {
    "@id": "https://cran.r-project.org",
    "@type": "Organization",
    "name": "Comprehensive R Archive Network (CRAN)",
    "url": "https://cran.r-project.org"
  },
  "relatedLink": "https://docs.ropensci.org/citecorp/"
}

GitHub Events

Total
  • Issues event: 4
  • Issue comment event: 2
  • Push event: 6
  • Pull request review event: 1
  • Pull request review comment event: 1
  • Pull request event: 1
Last Year
  • Issues event: 4
  • Issue comment event: 2
  • Push event: 6
  • Pull request review event: 1
  • Pull request review comment event: 1
  • Pull request event: 1

Dependencies

.github/workflows/R-check.yml actions
  • actions/cache v2 composite
  • actions/checkout v2 composite
  • actions/upload-artifact v2 composite
  • r-lib/actions/setup-pandoc v1 composite
  • r-lib/actions/setup-r v1 composite
.github/workflows/real-requests.yml actions
  • actions/cache v2 composite
  • actions/checkout v2 composite
  • actions/upload-artifact v2 composite
  • r-lib/actions/setup-pandoc v1 composite
  • r-lib/actions/setup-r v1 composite
DESCRIPTION cran
  • crul >= 0.7.0 imports
  • data.table * imports
  • fauxpas >= 0.5.0 imports
  • jsonlite * imports
  • testthat * suggests
  • vcr * suggests
  • webmockr * suggests