lipidomics

Informatics software and tools for lipidomics

https://github.com/egonw/lipidomics

Science Score: 57.0%

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  • CITATION.cff file
    Found CITATION.cff file
  • codemeta.json file
    Found codemeta.json file
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    Found .zenodo.json file
  • DOI references
    Found 3 DOI reference(s) in README
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  • Scientific vocabulary similarity
    Low similarity (3.0%) to scientific vocabulary
Last synced: 10 months ago · JSON representation ·

Repository

Informatics software and tools for lipidomics

Basic Info
  • Host: GitHub
  • Owner: egonw
  • License: cc0-1.0
  • Default Branch: main
  • Size: 14.6 KB
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Created over 3 years ago · Last pushed over 3 years ago
Metadata Files
Readme License Citation

README.md

Annotated Lipidomics Tools Guide

This repository lists the informatics software and tools for lipidomics mentioned in the Guiding the choice of informatics software and tools for lipidomics research applications paper published in 2022 (doi:10.1038/s41592-022-01710-0).

For each tools from the Lipidomics Tools Guide the elixir_mappings.csv file has links to three ELIXIR resources:

  • FAIRsharing: a curated, informative and educational resource on data and metadata standards, inter-related to databases and data policies
  • bio.tools: essential scientific and technical information about software tools, databases and services for bioinformatics and the life sciences
  • TeSS: ELIXIR's Training Portal: browsing, discovering and organising life sciences training resources, aggregated from ELIXIR nodes and 3rd-party providers

Owner

  • Name: Egon Willighagen
  • Login: egonw
  • Kind: user
  • Location: Maastricht, The Netherlands
  • Company: @BiGCAT-UM

Open scientist teaching and doing research at Maastricht University.

Citation (CITATION.cff)

cff-version: 1.2.0
message: Please cite the following works when using this software.
type: article
authors:
  - family-names: Ni
    given-names: Zhixu
  - family-names: Wölk
    given-names: Michele
  - family-names: Jukes
    given-names: Geoff
  - family-names: Espinosa
    given-names: Karla Mendivelso
  - family-names: Ahrends
    given-names: Robert
  - family-names: Aimo
    given-names: Lucila
  - family-names: Alvarez-Jarreta
    given-names: Jorge
  - family-names: Andrews
    given-names: Simon
  - family-names: Andrews
    given-names: Robert
  - family-names: Bridge
    given-names: Alan
  - family-names: Clair
    given-names: Geremy C.
  - family-names: Conroy
    given-names: Matthew J.
  - family-names: Fahy
    given-names: Eoin
  - family-names: Gaud
    given-names: Caroline
  - family-names: Goracci
    given-names: Laura
  - family-names: Hartler
    given-names: Jürgen
  - family-names: Hoffmann
    given-names: Nils
  - family-names: Kopczyinki
    given-names: Dominik
  - family-names: Korf
    given-names: Ansgar
  - family-names: Lopez-Clavijo
    given-names: Andrea F.
  - family-names: Malik
    given-names: Adnan
  - family-names: Ackerman
    given-names: Jacobo Miranda
  - family-names: Molenaar
    given-names: Martijn R.
  - family-names: O’Donovan
    given-names: Claire
  - family-names: Pluskal
    given-names: Tomáš
  - family-names: Shevchenko
    given-names: Andrej
  - family-names: Slenter
    given-names: Denise
  - family-names: Siuzdak
    given-names: Gary
  - family-names: Kutmon
    given-names: Martina
  - family-names: Tsugawa
    given-names: Hiroshi
  - family-names: Willighagen
    given-names: Egon L.
  - family-names: Xia
    given-names: Jianguo
  - family-names: O’Donnell
    given-names: Valerie B.
  - family-names: Fedorova
    given-names: Maria
doi: 10.1038/S41592-022-01710-0
identifiers:
  - type: doi
    value: 10.1038/S41592-022-01710-0
  - type: other
    value: urn:issn:1548-7091
keywords:
  - lipidomics
  - software
  - database
title: >-
  Guiding the choice of informatics software and tools for lipidomics research
  applications

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