newt - v4.0.0

• SBML-based notation
• SBGN bricks
• Remote launch from SBML, CellDesigner model, SIF and GPML
• PD to AF conversion
• Querying Reactome with Reactome ID and WikiPathways with WPID
• Lasso selection
• Miscellaneous bug fixes

- JavaScript
Published by hasanbalci over 1 year ago

newt - v3.1.1

• Bug fix on GPML import/export support
• Bug fix on loading from URL

- JavaScript
Published by hasanbalci almost 2 years ago

newt - v3.1.0

• Fixed GPML import/export support
• Fixed reading SBGN files with namespaces
• Fixed the positioning of compound nodes

- JavaScript
Published by NoorMuhammad1 almost 2 years ago

newt - v3.0.5

• Add a warning for the user to wait if loading an SBML file via URL will take some time

- JavaScript
Published by hasanbalci over 3 years ago

newt - v3.0.4

• Hot fix on spinner start and end while loading file and applying layout
• Infer nesting on load now moves processes into compartments based on majority of their neighbors
• Disable compound infobox setting on graph load and port adjustment after layout for large graphs

- JavaScript
Published by hasanbalci over 3 years ago

newt - v3.0.3

• Remote launch from SBML file now available.
• Fixed SBML conversion bugs.
• Fixed various issues with URL parameters on launch.

- JavaScript
Published by msalihaltun over 4 years ago

newt - v3.0.2

Miscellaneous fixes and improvements, especially regarding documentation and help

- JavaScript
Published by ugurdogrusoz over 5 years ago

newt - v3.0.1

Miscellaneous performance improvements and bug fixes

- JavaScript
Published by ugurdogrusoz over 5 years ago

newt - v3.0.0

• Experiment data overlay support
• Improved infobox positioning and compound padding support
• Fixed miscellaneous persistency issues
• Changed map type to be determined by the user
• Miscellaneous bug fixes

- JavaScript
Published by ugurdogrusoz over 5 years ago

newt - v2.0.0

• SBML support
• SIF view support
• Faster layout
• Quick tutorial on first launch
• UI guide
• Semantic validation of PD maps
• Persisting user preferences
• Reconnecting an existing edge
• Flexible infobox positioning and styling
• Color schemes with background images
• Shortcut for box zoom
• Closing a tab from a visual cue on the tab
• Miscellaneous bug fixes

- JavaScript
Published by hasanbalci about 6 years ago

newt -

• Export/import CellDesigner files
• Simple chemical properties from ChEBI
• Node background image support
• Improved info boxes (state variables and units of information)
• Support for reversible reactions
• Advanced zooming (zoom to box and zoom to selected)
• Animate to other end of interaction
• Specify overriding parameters for launch from URL/URI
• Miscellaneous bug fixes

- JavaScript
Published by kinimesi over 7 years ago

newt - Hotfixes

• Multiple tab support
• Launch Newt with URL or URI
• Load AF models from simple, tab-delimited text files
• Option to infer nesting on load
• New option to perform only fisheye transformation on expand (as opposed to both fisheye and incremental layout)
• Perform client side layout on PC queries

- JavaScript
Published by ugurdogrusoz almost 8 years ago

newt - Hotfixes

Layout performance improvements and minor bug fixes.

- JavaScript
Published by kinimesi about 8 years ago

newt - Hotfixes

Disable rearrangement on complexity management on load of large graphs Complex members are included inside their complex parents even when an explicit compartmentRef is provided on load

- JavaScript
Published by ugurdogrusoz about 8 years ago

newt - Hotfix

Annotation persistency problem fixed

- JavaScript
Published by ugurdogrusoz over 8 years ago

newt - First public release of Newt

See website for details on Newt

- JavaScript
Published by ugurdogrusoz over 8 years ago