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hippomaps

https://github.com/jordandekraker/hippomaps

Science Score: 49.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 1 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: biorxiv.org
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (11.6%) to scientific vocabulary
Last synced: 6 months ago · JSON representation

Repository

Basic Info
  • Host: GitHub
  • Owner: jordandekraker
  • License: gpl-3.0
  • Language: Jupyter Notebook
  • Default Branch: master
  • Size: 599 MB
Statistics
  • Stars: 9
  • Watchers: 2
  • Forks: 4
  • Open Issues: 1
  • Releases: 15
Created over 2 years ago · Last pushed 11 months ago
Metadata Files
Readme License Codemeta

README.md

Documentation Status Version

HippoMaps

This is a toolbox and repository for open source mapping and contextualization of hippocampal data, paralleling surface-based mapping of the neocortex. This is partnered with a repository of mapped data at OSF.

Documentation

See here for installation instructions, details on all tools provided, and tutorial walkthroughs.

Overview

HippoMaps provides tools for mapping data the folded and unfolded hippocampus are designed to work seamlessly with outputs generated by HippUnfold.

In the tutorials, we provide examples for mapping:

  • laminar ex-vivo histology at the microscale
  • structural MRI at 3T and 7T
  • resting state fMRI properties and connectivity
  • spatially scattered intracranial EEG (iEEG) recodings
  • task-fMRI data mapping with nilearn
  • comparison between maps and dimensionality reduction

These tutorials provide clear examples of how the tools here can be used, but for shorter examples and usage notes, see also demos.

Other relevant repositories

hippunfold

hippunfold_toolbox

HippoSpinTesting

BrainSpace

micapipe

Eigenstrapping

Citing HippoMaps

DeKraker, J., Cabalo, D. G., Royer, J., Khan, A. R., Karat, B., Benkarim, O., ... & Bernhardt, B. C. (2024). HippoMaps: Multiscale cartography of the human hippocampal formation. bioRxiv, 2024-02. link

For use of additional data in the OSF repo, please cite the original authors of each map.

Join the Open Source Adventure!

No contribution is too small! Whether you're fixing a bug, adding a feature, or improving documentation, every contribution counts!

Owner

  • Name: Jordan DeKraker
  • Login: jordandekraker
  • Kind: user

Postdoc at Mcgill University, Montreal PhD from University of Western Ontario, London

CodeMeta (codemeta.json) 

{
  "@context": "https://w3id.org/codemeta/3.0",
  "type": "SoftwareSourceCode",
  "applicationCategory": "Module, Notebook",
  "codeRepository": "git+https://github.com/jordandekraker/hippomaps.git",
  "dateCreated": "2024-05-11",
  "dateModified": "2024-09-30",
  "datePublished": "2024-09-30",
  "description": "This is a toolbox and repository for open source mapping and contextualization of hippocampal data, paralleling surface-based mapping of the neocortex. This is partnered with a repository of mapped data at OSF.",
  "keywords": [
    "Neuroscience",
    "Hippocampus"
  ],
  "license": "https://spdx.org/licenses/GPL-3.0",
  "name": "HippoMaps",
  "programmingLanguage": "Python 3",
  "relatedLink": "https://osf.io/92p34/",
  "releaseNotes": "Initial release",
  "softwareRequirements": "https://github.com/jordandekraker/hippomaps/blob/master/setup.py",
  "version": "0.1.0",
  "issueTracker": "https://github.com/jordandekraker/hippomaps/issues",
  "referencePublication": "https://www.biorxiv.org/content/10.1101/2024.02.23.581734v2"
}

GitHub Events

Total
  • Create event: 21
  • Issues event: 5
  • Release event: 17
  • Watch event: 2
  • Delete event: 8
  • Issue comment event: 11
  • Push event: 52
  • Pull request event: 4
Last Year
  • Create event: 21
  • Issues event: 5
  • Release event: 17
  • Watch event: 2
  • Delete event: 8
  • Issue comment event: 11
  • Push event: 52
  • Pull request event: 4

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 7
  • Total pull requests: 24
  • Average time to close issues: about 1 month
  • Average time to close pull requests: about 18 hours
  • Total issue authors: 3
  • Total pull request authors: 2
  • Average comments per issue: 2.0
  • Average comments per pull request: 0.21
  • Merged pull requests: 21
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 4
  • Pull requests: 11
  • Average time to close issues: 13 days
  • Average time to close pull requests: about 18 hours
  • Issue authors: 3
  • Pull request authors: 2
  • Average comments per issue: 3.0
  • Average comments per pull request: 0.18
  • Merged pull requests: 9
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • jordandekraker (4)
  • zihuaihuai (2)
  • JAQuent (1)
Pull Request Authors
  • jordandekraker (39)
  • zihuaihuai (4)
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • pypi 72 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 13
  • Total maintainers: 1
pypi.org: hippomaps

A toolbox for viewing, manipulating, and additional actions on HippUnfold outputs

  • Versions: 13
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 72 Last month
Rankings
Dependent packages count: 10.1%
Average: 33.4%
Dependent repos count: 56.8%
Maintainers (1)
jordandekraker
Last synced: 6 months ago