looseleaf

Research compendium template for tracking, linking, and sharing data explorations

https://github.com/jsta/looseleaf

Science Score: 28.0%

This score indicates how likely this project is to be science-related based on various indicators:

✓
CITATION.cff file
Found CITATION.cff file
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codemeta.json file
○
.zenodo.json file
○
DOI references
○
Academic publication links
✓
Committers with academic emails
5 of 36 committers (13.9%) from academic institutions
○
Institutional organization owner
○
JOSS paper metadata
○
Scientific vocabulary similarity
Low similarity (11.4%) to scientific vocabulary

Keywords from Contributors

carpentries english lesson stable geospatial-data carpentries-incubator climate alpha helpwanted-list bioinformatics

Last synced: 11 months ago · JSON representation ·

Repository

Research compendium template for tracking, linking, and sharing data explorations

Basic Info

Host: GitHub
Owner: jsta
License: other
Language: HTML
Default Branch: gh-pages
Homepage: https://jsta.github.io/looseleaf
Size: 2.08 MB

Statistics

Stars: 5
Watchers: 1
Forks: 1
Open Issues: 0
Releases: 1

Created about 8 years ago · Last pushed almost 3 years ago

Metadata Files

Readme Contributing License Citation

root: .

looseleaf :leaves:

Research compendium template for tracking, linking, and sharing data explorations

Motivation

It is difficult to manage a linked collection of R notebooks.

bookdown is great except for a few key downsides arising from the fact that chapters are concatenated on render so that chunk labels cannot be duplicated, selective caching becomes difficult, and there can be no chapter level knitr hooks.

Features

rmarkdown files are only re-built if they have changed since the last rebuild
turn off chapter/page evaluation (or message printing) with a single knitr hook
a looseleaf build will continue despite evaluation errors
keep track of R package dependencies in DESCRIPTION

Example

https://jsta.github.io/looseleaf

Usage

Clone this repo
Do not edit the auto-generated files in _site

Workflow

Create an Rmd file with the yaml header and chunk options in the provided template
Add CRAN and Github package dependencies to DESCRIPTION
Call make looseleaf-md from the command line (see required R packages for all projects in setup.md)
Render to html (3 options)

* locally using `make serve` (see optional system dependencies in [setup.md](setup.md#dependencies-for-all-looseleaf-projects))

* remotely for public repos by enabling Github pages

* remotely for private repos by building a zip file on **Gitlab** CI (see `.gitlab-ci.yml`)

Prior art

https://github.com/swcarpentry/styles

Owner

Name: Jemma Stachelek
Login: jsta
Kind: user
Location: New Mexico, USA
Company: Los Alamos National Laboratory

Website: http://jsta.rbind.io
Repositories: 366
Profile: https://github.com/jsta

Citation (CITATION)

Stachelek, Jemma, 2018. looseleaf: Research compendium template for tracking, linking, and sharing data explorations, GitHub repository, https://github.com/jsta/looseleaf

GitHub Events

Total

Last Year

Committers

Last synced: 12 months ago

All Time

Total Commits: 400
Total Committers: 36
Avg Commits per committer: 11.111
Development Distribution Score (DDS): 0.763

Past Year

Commits: 0
Committers: 0
Avg Commits per committer: 0.0
Development Distribution Score (DDS): 0.0

Top Committers

Name	Email	Commits
Greg Wilson	g**n@t**m	95
jsta	s**2@m**u	83
Raniere Silva	r**e@r**m	58
Francois Michonneau	f**u@g**m	46
Abigail Cabunoc	a**c@o**a	25
Raniere Silva	r**e@i**r	24
Maxim Belkin	m**n@g**m	14
Katrin Leinweber	k**i@p**e	7
Rémi Emonet	r**t@r**e	5
David Mawdsley	d**y@m**k	4
Piotr Banaszkiewicz	p**r@b**g	4
William L. Close	w****e	3
Raniere Silva	r**7@i**r	2
Brandon Curtis	b**s@g**m	2
Ian Lee	l**1@l**v	2
Nick Young	n**g@a**z	2
James Allen	j**8@g**m	2
Jon Pipitone	j**e@u**a	2
Erin Becker	e**r@g**m	2
evanwill	e**w@g**m	2
Andrew Sanchez	i**z@g**m	1
Andy Boughton	a****t	1
Timothée Poisot	t**m@p**o	1
Ian Carroll	i**l@s**g	1
Greg Wilson	g**n@s**g	1
Bill Mills	m**j@g**m	1
David Perez Suarez	d**o@g**m	1
Gabriel A. Devenyi	g**i@g**m	1
Joel Nothman	j**n@g**m	1
Jonah Duckles	j**h@d**g	1
and 6 more...

Committer Domains (Top 20 + Academic)

ime.unicamp.br: 2 third-bit.com: 1 msu.edu: 1 rgaiacs.com: 1 oicr.on.ca: 1 posteo.de: 1 reverse--com.heeere: 1 manchester.ac.uk: 1 banaszkiewicz.org: 1 llnl.gov: 1 auckland.ac.nz: 1 utoronto.ca: 1 poisotlab.io: 1 sesync.org: 1 software-carpentry.org: 1 duckles.org: 1 tremily.us: 1 email.arizona.edu: 1

Issues and Pull Requests

Last synced: 12 months ago

All Time

Total issues: 4
Total pull requests: 0
Average time to close issues: about 17 hours
Average time to close pull requests: N/A
Total issue authors: 1
Total pull request authors: 0
Average comments per issue: 0.25
Average comments per pull request: 0
Merged pull requests: 0
Bot issues: 0
Bot pull requests: 0

Past Year

Issues: 0
Pull requests: 0
Average time to close issues: N/A
Average time to close pull requests: N/A
Issue authors: 0
Pull request authors: 0
Average comments per issue: 0
Average comments per pull request: 0
Merged pull requests: 0
Bot issues: 0
Bot pull requests: 0

looseleaf

Science Score: 28.0%

Keywords from Contributors

Repository

Basic Info

Statistics

Metadata Files

README.md

root: .

looseleaf :leaves:

Motivation

Features

Example

Usage

Workflow

Prior art

Owner

Citation (CITATION)

GitHub Events

Total

Last Year

Committers

All Time

Past Year

Top Committers

Committer Domains (Top 20 + Academic)

Issues and Pull Requests

All Time

Past Year

Top Authors

Issue Authors

Pull Request Authors

Top Labels

Issue Labels

Pull Request Labels

Dependencies