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gse2study

A set of scripts to download raw data form NCBI, build an epimedtool study and more.

https://github.com/fchuffar/gse2study

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (2.3%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

A set of scripts to download raw data form NCBI, build an epimedtool study and more.

Basic Info
  • Host: GitHub
  • Owner: fchuffar
  • Language: Shell
  • Default Branch: master
  • Size: 168 KB
Statistics
  • Stars: 2
  • Watchers: 2
  • Forks: 2
  • Open Issues: 0
  • Releases: 0
Created about 7 years ago · Last pushed about 1 year ago
Metadata Files
Readme Codemeta

README.md

gse2study

Run pipeline on the cluster

Cluster prerequisites

https://github.com/fchuffar/practiclesessions/blob/master/cimentinfrastructure/config_cluster.sh

Owner

  • Name: Florent Chuffart
  • Login: fchuffar
  • Kind: user
  • Location: Grenoble
  • Company: INSERM

CodeMeta (codemeta.json) 

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  "identifier": "ptlmapper",
  "description": "This package contains functions that are used to map single-cell Probabilistic Trait Loci (scPTL). The principle of scPTL mapping is to consider a distribution of single-cell traits as the phenotype of a (multicellular) individual, to acquire this phenotype in many individuals, and to scan the genome for DNA variants that change this phenotype.",
  "name": "ptlmapper: Useful genetic tool allowing to discriminate individuals by comparing the distribution of their phenotype and to map the genetic loci responsible for specific distributions",
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}

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