mycoplasmaproject_2023
Science Score: 13.0%
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○CITATION.cff file
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○.zenodo.json file
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○Scientific vocabulary similarity
Low similarity (3.9%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: elviradbastiani
- License: other
- Language: R
- Default Branch: Manuscript
- Size: 10.7 MB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
Social interactions do not affect Mycoplasma spp. infection in griffon vultures
Authors
- Elvira DBastiani*# (1)
- Nili Anglister# (2)
- Inna Lysynyansky (3)
- Inna Mikula (3)
- Marta Accio (2)
- Gideon Vaadia (2)
- Kaija Gahm (1)
- Orr Spiegel (2) (PI)
- Noa Pinter-Wollman (1) (PI)
Institutions
- (1) Department of Ecology and Evolutionary Biology, University of California Los Angeles, Los Angeles, California, USA
- (2) School of Zoology, Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel.
- (3) Mycoplasma unit, Department of Avian Diseases, Professor Kimron Str 1, Kimron Veterinary Institute (KVI), POB12, Beit Dagan, Israel.
These authors contributed equally.
**Corresponding author*: Elvira DBastiani - email: elviradbastiani@gmail.com
ORCIDs: - Elvira DBastiani: 0000-0002-8615-2763 - Nili Anglister: 0000-0002-6848-6348 - Inna Lysynyansky: 0000-0002-6923-3676 - Inna Mikula: without ORCID - Marta Accio: 0000-0002-9947-1181 - Kaija Gahm: 0000-0002-4612-4426 - Orr Spiegel: 0000-0001-8941-3175 - Noa Pinter-Wollman: 0000-0002-0448-8037
Running headline: Social interactions do not shape infection status
Abstract
Uncovering the ways in which pathogens spread has important implications for population health and management. Pathogen transmission is influenced by various factors, including patterns of social interactions and shared use of space. We aim to understand how the social behavior of griffon vultures (Gyps fulvus), a species of conservation interest, influences the presence or absence of mycoplasma, a group of bacteria known to cause respiratory diseases in birds. We investigated how direct and indirect social interactions of griffon vultures in the wild, in different social situations, impacted the mycoplasma infection status. We inferred interactions from high-resolution Global Positioning system (GPS) tracking data. Specifically, we assessed how social behavior affects infection status when vultures share feeding and roosting locations, either at the same time (direct interactions) or subsequently, when space use is asynchronous (indirect interactions). We did not detect a significant effect of any social situation and type of interaction on infection status. However, we observed a high population prevalence of mycoplasma, suggesting that other factors might be more important than social interactions in determining the transmission of this bacteria in the Israeli vulture population. Uncovering the mechanisms that underlie infection status in wildlife is crucial for maintaining viable populations, designing containment management actions, and gaining insights into the ecological mechanisms that drive infectious disease dynamics.
Keywords
feeding, infectious disease, movement ecology, pathogen transmission, roosting, social interactions.
NAMING
Manuscript (Branch)
Folder 1. Code
- File 1. README.txt
- File 2. Script1aCreatingnetworkstocofeeding.R - Script to creating networks to co-feeding interactions.
- File 3. Script1bCreatingnetworkstocoroosting.R - Script to creating networks to coroosting interactions.
- File 4. Script2Analysingnetworks.R - Script to analyzing the social position in the network (degree, betweenness, and strength) of griffon vultures.
- File 5. Script3GLMM_analysis.R - Script to analysing the relationship between mycoplasma infection status and social position (degree, betweenness, and strength) of griffon vultures.
Folder 3. Sensitivity analysis for spatial distance effect
Co-feeding situation:
- File 1. README.txt
- File 2. results_DI_100meters_14days.txt
- File 3. results_DI_10meters_14days.txt
- File 4. results_DI_50meters_14days.txt
- File 5. results_DI_75meters_14days.txt
- File 6. results_IND_100meters_14days.txt
- File 7. results_IND_10meters_14days.txt
- File 8. results_IND_50meters_14days.txt
- File 9. results_IND_75meters_14days.txt
Co-roosting situation:
- File 1. README.txt
- File 2. results_DI_100meters_14days.txt
- File 3. results_DI_10meters_14days.txt
- File 4. results_DI_50meters_14days.txt
- File 5. results_DI_75meters_14days.txt
- File 6. results_IND_100meters_14days.txt
- File 7. results_IND_10meters_14days.txt
- File 8. results_IND_50meters_14days.txt
- File 9. results_IND_75meters_14days.txt
Folder 4. Sensitivity analysis for time window effect
Co-feeding situation:
- File 1. README.txt
- File 2. results_DI_25meters_14days.txt
- File 3. results_DI_25meters_21days.txt
- File 4. results_DI_25meters_28days.txt
- File 5. results_DI_25meters_7days.txt
- File 6. results_IND_25meters_14days.txt
- File 7. results_IND_25meters_21days.txt
- File 8. results_IND_25meters_28days.txt
- File 9. results_IND_25meters_7days.txt
Co-roosting situation:
- File 1. README.txt
- File 2. results_DI_25meters_14days.txt
- File 3. results_DI_25meters_21days.txt
- File 4. results_DI_25meters_28days.txt
- File 5. results_DI_25meters_7days.txt
- File 6. results_IND_25meters_14days.txt
- File 7. results_IND_25meters_21days.txt
- File 8. results_IND_25meters_28days.txt
- File 9. results_IND_25meters_7days.txt
Folder 5. Main results
- File 1. README.txt
- File 2. cofeeding_results_DI_25meters_14days.txt
- File 3. cofeeding_results_IND_25meters_14days.txt
- File 4. coroosting_results_DI_25meters_14days.txt
- File 5. coroosting_results_IND_25meters_14days.txt
File formats:
i. Databases: .txt, .rda
ii. Geospatial: .kml
iii. Scripts: .r
vi. Images: png
v. Text: pdf
Units of measurement:
i. m = meters
ii. sec = seconds
iii. min = minutes
iv. h = hour
v. days
Data formats:
i. DDMMYYYY
ii. YYYYMMDD
Software:
i. R version 4.3.1 (R Core Team, 2013)
Citation: DBastiani, E.*, Anglister, N., Lysynyansky, I., Mikula, I., Accio, M., Vaadia, G., Gahm, K., Spiegel, O., Pinter-Wollman, N. "Social Interactions and Mycoplasma Infection in Griffon Vultures." Journal of [Journal Name], [Year], [Volume(Issue)], [Page Range]. DOI: [DOI Number].
Owner
- Name: Elvira D'Bastiani
- Login: elviradbastiani
- Kind: user
- Location: Los Angeles, Califórnia, EUA
- Company: University of California
- Website: https://elviradbastiani.wixsite.com/ecoevo
- Twitter: elviradbastiani
- Repositories: 3
- Profile: https://github.com/elviradbastiani
Postdoc at Pinter-Wollman Lab - University of California, Los Angeles
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- Push event: 1