gapmm2 - gapmm2 v25.8.12

• bug fix to deal with alignments missing expected tags

Full Changelog: https://github.com/nextgenusfs/gapmm2/compare/v25.4.13...v25.8.12

- Python
Published by nextgenusfs 8 months ago

gapmm2 - gapmm2 v25.4.13

• Discovered a segmentation fault derived from mappy, based on the repo it looks like this has been brought up but not fixed. So as a patch, this release will run minimap2 binary instead of mappy if it is installed in the PATH.
• Results are now streamed instead of stored in memory.

Full Changelog: https://github.com/nextgenusfs/gapmm2/compare/v25.4.5...v25.4.13

- Python
Published by nextgenusfs 12 months ago

gapmm2 - gapmm2 v25.4.5

This release adds tests and some linting to the codebase.

Full Changelog: https://github.com/nextgenusfs/gapmm2/compare/v23.11.3...v25.4.5

- Python
Published by nextgenusfs about 1 year ago

gapmm2 - gapmm2 v23.11.3

• change to CalVer versioning
• bug fix for edge case alignment

- Python
Published by nextgenusfs over 2 years ago

gapmm2 - gapmm2 v0.2.0

• supports output in GFF3 format as well as PAF
• some fixes to the --version flag and readme
• output is now sorted by contig and then contig start position

- Python
Published by nextgenusfs about 4 years ago

gapmm2 - gapmm2 v0.1.1

• add option to control terminal search space, -i, --max_intron
• fix off-by-one bug on left minus alignments in cs flag

- Python
Published by nextgenusfs about 4 years ago

gapmm2 - gapmm2 v0.1.0

Initial release of gapmm2.

- Python
Published by nextgenusfs about 4 years ago