galaxy-k8s-job-retries

Science Score: 13.0%

This score indicates how likely this project is to be science-related based on various indicators:

○
CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
○
.zenodo.json file
○
DOI references
○
Academic links in README
○
Academic email domains
○
Institutional organization owner
○
JOSS paper metadata
○
Scientific vocabulary similarity
Unable to calculate vocabulary similarity

.github/workflows/api.yaml actions

actions/cache v4 composite
actions/checkout v4 composite
actions/setup-node v4 composite
actions/setup-python v5 composite
actions/upload-artifact v4 composite
codecov/codecov-action v3 composite
postgres 13 docker

.github/workflows/build_client.yaml actions

actions/cache v4 composite
actions/checkout v4 composite
actions/setup-node v4 composite

.github/workflows/build_container_image.yaml actions

actions-hub/docker master composite
actions-hub/docker/login master composite
actions/checkout v4 composite

.github/workflows/check_test_class_names.yaml actions

actions/cache v4 composite
actions/checkout v4 composite
actions/setup-python v5 composite

.github/workflows/codeql-analysis.yml actions

actions/checkout v4 composite
github/codeql-action/analyze v3 composite
github/codeql-action/autobuild v3 composite
github/codeql-action/init v3 composite

.github/workflows/converter_tests.yaml actions

actions/cache v4 composite
actions/checkout v4 composite
actions/setup-node v4 composite
actions/setup-python v5 composite
actions/upload-artifact v4 composite

.github/workflows/cwl_conformance.yaml actions

actions/cache v4 composite
actions/checkout v4 composite
actions/setup-node v4 composite
actions/setup-python v5 composite
actions/upload-artifact v4 composite
codecov/codecov-action v3 composite
postgres 13 docker

.github/workflows/db_indexes.yaml actions

actions/cache v4 composite
actions/checkout v4 composite
actions/setup-python v5 composite
postgres ${{ matrix.postgresql-version }} docker

.github/workflows/dependencies.yaml actions

actions/checkout v4 composite
actions/setup-python v5 composite
peter-evans/create-pull-request v6 composite

.github/workflows/deployment.yaml actions

actions/cache v4 composite
actions/checkout v4 composite
actions/setup-python v5 composite
actions/upload-artifact v4 composite
nanasess/setup-chromedriver v2 composite

.github/workflows/docs.yaml actions

actions/cache v4 composite
actions/checkout v4 composite
actions/setup-python v5 composite

.github/workflows/first_startup.yaml actions

actions/cache v4 composite
actions/checkout v4 composite
actions/setup-node v4 composite
actions/setup-python v5 composite

.github/workflows/framework_tools.yaml actions

actions/cache v4 composite
actions/checkout v4 composite
actions/setup-node v4 composite
actions/setup-python v5 composite
actions/upload-artifact v4 composite
codecov/codecov-action v3 composite
postgres 13 docker

.github/workflows/framework_workflows.yaml actions

actions/cache v4 composite
actions/checkout v4 composite
actions/setup-node v4 composite
actions/setup-python v5 composite
actions/upload-artifact v4 composite
codecov/codecov-action v3 composite
postgres 13 docker

.github/workflows/integration.yaml actions

actions/cache v4 composite
actions/checkout v4 composite
actions/setup-node v4 composite
actions/setup-python v5 composite
actions/upload-artifact v4 composite
codecov/codecov-action v3 composite
eWaterCycle/setup-apptainer v2 composite
medyagh/setup-minikube latest composite
postgres 13 docker
rabbitmq * docker

.github/workflows/integration_selenium.yaml actions

actions/cache v4 composite
actions/checkout v4 composite
actions/setup-node v4 composite
actions/setup-python v5 composite
actions/upload-artifact v4 composite
codecov/codecov-action v3 composite
postgres 13 docker

.github/workflows/jest.yaml actions

actions/checkout v4 composite
actions/setup-node v4 composite

.github/workflows/js_lint.yaml actions

actions/checkout v4 composite
actions/setup-node v4 composite

.github/workflows/labels-verifier.yaml actions

actions/github-script v7 composite

.github/workflows/lint.yaml actions

actions/cache v4 composite
actions/checkout v4 composite
actions/setup-python v5 composite
isort/isort-action v1 composite
psf/black stable composite

.github/workflows/lint_openapi_schema.yml actions

actions/cache v4 composite
actions/checkout v4 composite
actions/setup-node v4 composite
actions/setup-python v5 composite

.github/workflows/maintenance_bot.yaml actions

actions/github-script v7 composite
actions/labeler v5 composite

.github/workflows/mulled.yaml actions

actions/cache v4 composite
actions/checkout v4 composite
actions/setup-python v5 composite
actions/upload-artifact v4 composite
eWaterCycle/setup-apptainer v2 composite

.github/workflows/osx_startup.yaml actions

actions/cache v4 composite
actions/checkout v4 composite
actions/setup-node v4 composite
conda-incubator/setup-miniconda v3 composite

.github/workflows/performance.yaml actions

actions/cache v4 composite
actions/checkout v4 composite
actions/setup-node v4 composite
actions/setup-python v5 composite
actions/upload-artifact v4 composite
postgres 13 docker

.github/workflows/publish_artifacts.yaml actions

actions/checkout v4 composite
actions/setup-python v5 composite

.github/workflows/reports_startup.yaml actions

actions/cache v4 composite
actions/checkout v4 composite
actions/setup-node v4 composite
actions/setup-python v5 composite

.github/workflows/selenium.yaml actions

actions/cache v4 composite
actions/checkout v4 composite
actions/setup-node v4 composite
actions/setup-python v5 composite
actions/upload-artifact v4 composite
codecov/codecov-action v3 composite
postgres 13 docker

.github/workflows/setup_selenium.yaml actions

nanasess/setup-chromedriver v2 composite

.github/workflows/test_galaxy_packages.yaml actions

actions/cache v4 composite
actions/checkout v4 composite
actions/setup-node v4 composite
actions/setup-python v5 composite

.github/workflows/test_galaxy_packages_for_pulsar.yaml actions

actions/cache v4 composite
actions/checkout v4 composite
actions/setup-python v5 composite
eWaterCycle/setup-apptainer v2 composite

.github/workflows/test_galaxy_release.yaml actions

actions/checkout v4 composite

.github/workflows/toolshed.yaml actions

actions/cache v4 composite
actions/checkout v4 composite
actions/setup-node v4 composite
actions/setup-python v5 composite
actions/upload-artifact v4 composite
postgres 13 docker

.github/workflows/unit-postgres.yaml actions

actions/cache v4 composite
actions/checkout v4 composite
actions/setup-node v4 composite
actions/setup-python v5 composite
postgres 13 docker

.github/workflows/unit.yaml actions

actions/cache v4 composite
actions/checkout v4 composite
actions/setup-node v4 composite
actions/setup-python v5 composite
actions/upload-artifact v4 composite
codecov/codecov-action v3 composite

client/Dockerfile docker

digitallyseamless/nodejs-bower-grunt latest build

lib/galaxy/web/proxy/js/Dockerfile docker

node 0.11.13 build

test/functional/tools/realtime/simple/Dockerfile docker

python 2.7 build

client/package.json npm

@babel/core ^7.23.2 development
@babel/helper-validator-identifier ^7.22.20 development
@babel/plugin-transform-runtime ^7.23.2 development
@babel/preset-env ^7.23.2 development
@babel/preset-typescript ^7.23.2 development
@cerner/duplicate-package-checker-webpack-plugin ^2.3.0 development
@pinia/testing 0.1.3 development
@testing-library/jest-dom ^6.4.8 development
@types/d3 ^7.4.2 development
@types/dompurify ^3.0.2 development
@types/jquery ^3.5.24 development
@types/lodash ^4.14.200 development
@types/lodash.isequal ^4.5.7 development
@types/markdown-it ^13.0.4 development
@types/underscore ^1.11.12 development
@typescript-eslint/eslint-plugin ^6.8.0 development
@typescript-eslint/parser ^6.8.0 development
@vue/test-utils ^1.3.6 development
@vue/tsconfig ^0.4.0 development
@vue/vue2-jest ^29.2.6 development
amdi18n-loader ^0.9.4 development
autoprefixer 10.4.16 development
axios-mock-adapter ^1.22.0 development
babel-jest ^29.7.0 development
babel-plugin-transform-import-meta ^2.2.1 development
buffer ^6.0.3 development
cpy-cli ^5.0.0 development
css-loader ^6.8.1 development
css-minimizer-webpack-plugin ^5.0.1 development
del ^6.0.0 development
eslint ^8.52.0 development
eslint-plugin-compat ^4.2.0 development
eslint-plugin-import ^2.28.1 development
eslint-plugin-simple-import-sort ^10.0.0 development
eslint-plugin-vue ^9.17.0 development
eslint-plugin-vuejs-accessibility ^2.2.0 development
expose-loader ^4.1.0 development
fake-indexeddb ^6.0.0 development
gulp ^4.0.2 development
ignore-loader ^0.1.2 development
imports-loader ^4.0.1 development
jest ^29.7.0 development
jest-environment-jsdom ^29.7.0 development
jest-fixed-jsdom ^0.0.2 development
jest-location-mock ^2.0.0 development
jsdom-worker ^0.3.0 development
json-loader ^0.5.7 development
mini-css-extract-plugin ^2.7.6 development
msw ^2.3.4 development
openapi-msw ^0.7.0 development
openapi-typescript ^7.3.0 development
postcss-loader ^7.3.3 development
prettier ^2.8.8 development
process ^0.11.10 development
raw-loader ^4.0.2 development
sass ^1.69.4 development
sass-loader ^13.3.2 development
store ^2.0.12 development
style-loader ^3.3.3 development
ts-jest ^29.2.3 development
ts-loader ^9.5.0 development
tsconfig-paths-webpack-plugin ^4.1.0 development
typescript ^5.2.2 development
vue-loader ^15.11.1 development
vue-template-compiler ^2.7.14 development
webpack ^5.89.0 development
webpack-cli ^5.1.4 development
webpack-dev-server ^4.15.1 development
webpack-merge ^5.10.0 development
xml-js ^1.6.11 development
yaml-jest ^1.2.0 development
yaml-loader ^0.8.0 development
@citation-js/core ^0.7.1
@citation-js/plugin-bibtex ^0.7.2
@citation-js/plugin-csl ^0.7.2
@fontsource/atkinson-hyperlegible ^5.0.17
@fortawesome/fontawesome-free ^5.15.4
@fortawesome/fontawesome-svg-core ^6.2.1
@fortawesome/free-brands-svg-icons ^5.15.4
@fortawesome/free-regular-svg-icons ^5.15.4
@fortawesome/free-solid-svg-icons ^5.15.4
@fortawesome/vue-fontawesome ^2.0.9
@handsontable/vue ^2.0.0
@hirez_io/observer-spy ^2.1.2
@johmun/vue-tags-input ^2.1.0
@popperjs/core ^2.11.8
@sentry/browser ^7.74.1
@sentry/vue ^7.114.0
@types/jest ^29.5.12
@vueuse/core ^10.5.0
@vueuse/math ^10.9.0
assert ^2.1.0
axios ^1.6.2
babel-runtime ^6.26.0
backbone 1.5.0
bootstrap 4.6
bootstrap-vue ^2.23.0
core-js ^3.33.1
csv-parse ^5.5.2
d3 ^7.8.5
d3-zoom ^3.0.0
d3v3 npm:d3@3
date-fns ^2.30.0
decode-uri-component ^0.2.1
dexie ^3.2.5
dom-to-image ^2.6.0
dompurify ^3.0.6
dumpmeta-webpack-plugin ^0.2.0
elkjs ^0.8.2
file-saver ^2.0.5
flush-promises ^1.0.2
glob ^10.3.10
handsontable ^4.0.0
hsluv ^1.0.1
imask ^7.1.3
jquery 2
jquery-migrate ~1.4
jquery-mousewheel ^3.1.13
jquery-ui ^1.13.2
jspdf ^2.5.1
linkify-html ^4.1.1
linkifyjs ^4.1.1
lodash.isequal ^4.5.0
lucide-vue ^0.344.0
markdown-it ^13.0.2
markdown-it-regexp ^0.4.0
object-hash ^3.0.0
openapi-fetch ^0.10.6
pinia ^2.1.7
popper.js ^1.16.1
pretty-bytes ^6.1.1
pyre-to-regexp ^0.0.6
querystring-es3 ^0.2.1
regenerator-runtime ^0.14.0
requirejs 2.3.7
rxjs ^7.8.1
rxjs-spy ^8.0.2
rxjs-spy-devtools-plugin ^0.0.4
simplify-js ^1.2.4
slugify ^1.6.6
stream-browserify ^3.0.0
timers-browserify ^2.0.12
toastr ^2.1.4
tus-js-client ^3.1.1
underscore ^1.13.6
util ^0.12.5
vue ^2.7.14
vue-infinite-scroll ^2.0.2
vue-multiselect ^2.1.7
vue-observe-visibility ^1.0.0
vue-prismjs ^1.2.0
vue-router ^3.6.5
vue-rx ^6.2.0
vue-virtual-scroll-list ^2.3.5
vue2-teleport ^1.0.1
vuedraggable ^2.24.3
winbox ^0.2.82
xml-beautifier ^0.5.0

client/yarn.lock npm

1698 dependencies

config/plugins/visualizations/PCA_3Dplot/package.json npm

d3 ^7.4.4
pca-js ^1.0.2
plotly.js ^2.11.1

config/plugins/visualizations/annotate_image/package.json npm

parcel 2.12.0 development
jquery ^3.3.1
jquery-contextmenu ^2.7.1
jquery.ui.position ^1.11.4
paper ^0.12.3
underscore ^1.8.3

config/plugins/visualizations/chiraviz/package.json npm

copy-webpack-plugin ^5.1.1 development
css-loader ^3.4.2 development
file ^0.2.2 development
file-loader ^5.0.2 development
mini-css-extract-plugin ^0.9.0 development
script-loader ^0.7.2 development
system ^2.0.1 development
url-loader ^4.0.0 development
webpack ^4.42.1 development
webpack-cli ^3.3.11 development
bootstrap 3.3.7
font-awesome ^4.7.0
jquery 3.2.1
plotly.js ^1.52.3
underscore 1.8.3

config/plugins/visualizations/cytoscape/package.json npm

parcel ^2.12.0 development
babel-preset-env ^1.6.1
backbone ^1.3.3
bootstrap ^3.3.7
cytoscape ^3.2.8
jquery ^3.1.1

config/plugins/visualizations/drawrna/package.json npm

os-browserify ^0.3.0 development
parcel ^2.12.0 development
path-browserify ^1.0.0 development
process ^0.11.10 development
babel-preset-env ^1.6.1
backbone ^1.3.3
bootstrap ^3.3.7
drawrnajs ^1.2.6
jquery ^3.1.1

config/plugins/visualizations/editor/package.json npm

css-loader ^3.4.2 development
extract-text-webpack-plugin ^3.0.2 development
file-loader ^5.0.2 development
mini-css-extract-plugin ^0.9.0 development
style-loader ^1.1.3 development
webpack ^4.41.6 development
webpack-cli ^3.3.11 development
ace-builds ^1.4.8

config/plugins/visualizations/example/package.json npm

parcel 2.11.0 development
@galaxyproject/charts ^0.1.0
babel-preset-env ^1.6.1
backbone ^1.3.3
bootstrap ^3.3.7
d3 ^4.12.2
jquery ^3.1.1
underscore ^1.8.3

config/plugins/visualizations/fits_image_viewer/package.json npm

parcel ^2.12.0 development
aladin-lite-galaxy ^1.0.0
cpy-cli ^5.0.0

config/plugins/visualizations/h5web/package.json npm

parcel ^2.12.0 development
process ^0.11.10 development
@h5web/app ^12.0.1
buffer ^6.0.3
normalize.css ^8.0.1
react 18.3.1
react-dom 18.3.1

config/plugins/visualizations/heatmap/heatmap_default/package.json npm

parcel 2.11.0 development
@galaxyproject/charts ^0.1.0
babel-preset-env ^1.6.1
backbone ^1.4.0
bootstrap ^3.3.7
d3 3
jquery ^3.5.1
underscore ^1.11.0

config/plugins/visualizations/hyphyvision/package.json npm

css-loader ^3.4.2 development
expose-loader ^0.7.5 development
file-loader ^5.0.2 development
hyphy-vision 2.6.3 development
mini-css-extract-plugin ^0.9.0 development
phylotree 0.1.6 development
style-loader ^1.1.3 development
webpack ^4.41.6 development
webpack-cli ^3.3.11 development
fbjs ^1.0.0
underscore ^1.9.2

config/plugins/visualizations/jqplot/jqplot_bar/package.json npm

parcel 2.11.0 development
@galaxyproject/charts ^0.1.0
babel-preset-env ^1.6.1
backbone ^1.3.3
bootstrap ^3.3.7
d3 ^4.12.2
jqplot-exported ^1.0.9-pm.9
jquery ^3.1.1
underscore ^1.13.1

config/plugins/visualizations/media_player/package.json npm

plyr ^3.6.2

config/plugins/visualizations/msa/package.json npm

parcel ^2.12.0 development
babel-plugin-transform-export-extensions ^6.22.0
babel-preset-env ^1.6.1

config/plugins/visualizations/mvpapp/package.json npm

clean-webpack-plugin ^3.0.0 development
copy-webpack-plugin ^6.0.3 development
css-loader ^3.4.2 development
extract-text-webpack-plugin ^3.0.2 development
file ^0.2.2 development
file-loader ^5.0.2 development
mini-css-extract-plugin ^0.9.0 development
script-loader ^0.7.2 development
style-loader ^1.2.0 development
system ^2.0.1 development
url-loader ^4.0.0 development
webpack ^4.42.1 development
webpack-cli ^3.3.11 development
bootstrap 3
igv ^2.6.6

config/plugins/visualizations/ngl/package.json npm

parcel ^2.12.0 development
babel-preset-env ^1.6.1
backbone ^1.3.3
bootstrap ^3.3.7
jquery ^3.1.1
ngl ^0.10.4

config/plugins/visualizations/nora/package.json npm

@galaxyproject/nora 1.1.2
cpy-cli ^3.1.1

config/plugins/visualizations/nvd3/nvd3_bar/package.json npm

@babel/core ^7.24.6 development
parcel 2.11.0 development
@galaxyproject/charts ^0.1.0
backbone ^1.3.3
bootstrap ^3.3.7
d3 ^3.4.5
jquery ^3.3.1
nvd3 ^1.8.6
underscore ^1.8.3

config/plugins/visualizations/openlayers/package.json npm

buffer ^6.0.3 development
parcel ^2.12.0 development
process ^0.11.10 development
string_decoder ^1.3.0 development
axios ^0.19.0
babel-preset-env ^1.6.1
backbone ^1.3.3
bootstrap ^3.3.7
file-saver ^2.0.2
jquery ^3.3.1
jszip ^3.2.2
jszip-utils ^0.1.0
ol ^5.3.3
proj4 ^2.5.0
shpjs ^3.4.3
underscore ^1.8.3

config/plugins/visualizations/openseadragon/package.json npm

cpy-cli ^3.1.1
openseadragon ^2.4.2

config/plugins/visualizations/phylocanvas/package.json npm

parcel ^2.12.0 development
process ^0.11.10 development
@phylocanvas/phylocanvas.gl ^1.48.0
babel-preset-env ^1.6.1
deck.gl ^8.8.23

config/plugins/visualizations/pv/package.json npm

parcel ^2.12.0 development
bio-pv ^1.8.1

config/plugins/visualizations/scatterplot/package.json npm

parcel 2.11.0 development
backbone ^1.3.3
bootstrap ^3.3.7
d3 ^3.5.17
jquery ^3.2.1
jquery-ui-bundle ^1.12.1-migrate
underscore ^1.8.3

config/plugins/visualizations/tiffviewer/package.json npm

buffer ^5.5.0||^6.0.0 development
parcel ^2.9.3 development
process ^0.11.10 development
react 18.2.0
react-dom 18.2.0
react-tiff ^0.0.8

config/plugins/visualizations/ts_visjs/package.json npm

vis ^4.21.0

config/plugins/visualizations/venn/package.json npm

parcel 2.11.0 development
@galaxyproject/charts ^0.1.0
babel-preset-env ^1.6.1
backbone ^1.3.3
bootstrap ^3.3.7
d3 ^3.4.5
jquery ^3.1.1
underscore ^1.13.1

config/plugins/webhooks/demo/tour_generator/package.json npm

backbone ^1.3.3
parcel-bundler ^1.10.3
toastr ^2.1.4

lib/galaxy/web/proxy/js/package.json npm

commander ~2.20.3
eventemitter3 3.1.2
http-proxy 1.18.1
node-watch 0.7.0
sqlite3 4.2.0

lib/tool_shed/webapp/frontend/package.json npm

@graphql-codegen/cli ^2.16.1 development
@graphql-codegen/client-preset ^1.2.3 development
@quasar/vite-plugin ^1.0.4 development
@types/node ^16.6.1 development
@typescript-eslint/eslint-plugin ^5.47.1 development
@typescript-eslint/parser ^5.47.1 development
@vitejs/plugin-vue ^1.6.0 development
@vue/compiler-sfc ^3.2.6 development
@vue/eslint-config-typescript ^11.0.2 development
concurrently ^7.6.0 development
eslint ^8.30.0 development
eslint-config-prettier ^8.5.0 development
eslint-plugin-prettier ^4.2.1 development
eslint-plugin-vue ^9.8.0 development
eslint-plugin-vuejs-accessibility ^2.0.0 development
prettier ^2.8.1 development
sass ^1.32.0 development
typescript ^4.3.2 development
vite ^4.4.9 development
vue-eslint-parser ^9.1.0 development
vue-tsc ^1.0.16 development
@apollo/client ^3.8.6
@quasar/extras ^1.12.4
@vue/apollo-composable ^4.0.0-beta.1
@vue/apollo-option ^4.0.0-alpha.20
date-fns ^2.29.3
date-fns-tz ^1.3.7
e ^0.2.2
graphql ^16.6.0
graphql-tag ^2.12.6
openapi-fetch ^0.10.2
pinia ^2.0.28
quasar ^2.5.0
vue ^3.2.6
vue-router 4

lib/tool_shed/webapp/package.json npm

@galaxyproject/tool-shed-frontend ^0.2.1

package.json npm

@galaxyproject/galaxy-client ^24.0.0
cpy-cli ^5.0.0

lib/galaxy/dependencies/conditional-requirements.txt pypi

azure-storage-blob ==12.19.1
boto3 *
chronos-python ==1.2.1
custos-sdk *
drmaa *
fluent-logger *
fs-azureblob *
fs-basespace *
fs-gcsfs *
fs.anvilfs *
fs.dropboxfs >=1.0
fs.googledrivefs *
fs.onedatarestfs ==21.2.5.1
fs.sshfs *
fs.webdavfs >=0.4.2
galaxycloudrunner *
google-cloud-storage >=2.8.0
hvac *
influxdb *
kamaki *
ldap3 ==2.9.1
mysqlclient *
onedatafilerestclient *
pbs_python *
pkce *
psycopg2-binary ==2.9.9
pydyf <0.11
pygithub *
pykube-ng ==21.3.0
python-gitlab >=2.10.0
python-irodsclient ==2.0.0
python-ldap ==3.4.0
python-pam *
rucio-clients >=33.6.0
sentry-sdk *
statsd *
tensorflow ==2.9.3
total-perspective-vortex >=2.3.2,<3
watchdog *
weasyprint >=61.2

lib/galaxy/dependencies/dev-requirements.txt pypi

aiohttp ==3.9.5 development
aiosignal ==1.3.1 development
alabaster ==0.7.13 development
anyio ==4.4.0 development
ase ==3.23.0 development
async-timeout ==4.0.3 development
attrs ==23.2.0 development
axe-selenium-python ==2.1.6 development
babel ==2.15.0 development
backports-tarfile ==1.2.0 development
backports-zoneinfo ==0.2.1 development
black ==24.4.2 development
boto3 ==1.34.131 development
botocore ==1.34.131 development
build ==1.2.1 development
cachecontrol ==0.14.0 development
certifi ==2024.7.4 development
cffi ==1.16.0 development
charset-normalizer ==3.3.2 development
click ==8.1.7 development
codespell ==2.3.0 development
colorama ==0.4.6 development
contourpy ==1.2.1 development
contourpy ==1.1.1 development
coverage ==7.6.0 development
cryptography ==42.0.8 development
cwltest ==2.5.20240425111257 development
cycler ==0.12.1 development
darker ==2.1.1 development
darkgraylib ==1.2.1 development
decorator ==5.1.1 development
defusedxml ==0.7.1 development
deprecated ==1.2.14 development
docutils ==0.20.1 development
dogpile-cache ==1.2.2 development
exceptiongroup ==1.2.2 development
filelock ==3.15.4 development
fluent-logger ==0.11.1 development
fonttools ==4.53.1 development
frozenlist ==1.4.1 development
galaxy-release-util ==0.1.11 development
graylint ==1.1.1 development
greenlet ==3.0.3 development
h11 ==0.14.0 development
httpcore ==1.0.5 development
httpx ==0.27.0 development
idna ==3.7 development
imagesize ==1.4.1 development
importlib-metadata ==8.0.0 development
importlib-resources ==6.4.0 development
iniconfig ==2.0.0 development
isodate ==0.6.1 development
isort ==5.13.2 development
jaraco-classes ==3.4.0 development
jaraco-context ==5.3.0 development
jaraco-functools ==4.0.1 development
jeepney ==0.8.0 development
jinja2 ==3.1.4 development
jmespath ==1.0.1 development
jsonschema ==4.20.0 development
jsonschema-specifications ==2023.12.1 development
junit-xml ==1.9 development
keyring ==25.2.1 development
kiwisolver ==1.4.5 development
lxml ==5.2.2 development
markdown-it-py ==3.0.0 development
markdown-it-reporter ==0.0.2 development
markupsafe ==2.1.5 development
matplotlib ==3.7.5 development
matplotlib ==3.9.1 development
mdit-py-plugins ==0.4.1 development
mdurl ==0.1.2 development
mirakuru ==2.5.2 development
mistune ==3.0.2 development
more-itertools ==10.3.0 development
msgpack ==1.0.8 development
multidict ==6.0.5 development
mypy-extensions ==1.0.0 development
myst-parser ==3.0.1 development
nh3 ==0.2.18 development
numpy ==1.24.4 development
numpy ==2.0.0 development
onedatafilerestclient ==21.2.5.1 development
outcome ==1.3.0.post0 development
packaging ==24.1 development
pathspec ==0.12.1 development
pbr ==6.0.0 development
pillow ==10.4.0 development
pkce ==1.0.3 development
pkginfo ==1.10.0 development
platformdirs ==4.2.2 development
playwright ==1.45.0 development
pluggy ==1.5.0 development
port-for ==0.7.2 development
prettytable ==3.10.2 development
psutil ==6.0.0 development
psycopg ==3.2.1 development
pycparser ==2.22 development
pyee ==11.1.0 development
pygithub ==2.3.0 development
pygments ==2.18.0 development
pyjwt ==2.8.0 development
pynacl ==1.5.0 development
pyparsing ==3.1.2 development
pyproject-hooks ==1.1.0 development
pysocks ==1.7.1 development
pytest ==7.4.4 development
pytest-asyncio ==0.23.7 development
pytest-base-url ==2.1.0 development
pytest-cov ==5.0.0 development
pytest-html ==4.1.1 development
pytest-httpserver ==1.0.10 development
pytest-json-report ==1.5.0 development
pytest-metadata ==3.1.1 development
pytest-mock ==3.14.0 development
pytest-playwright ==0.5.1 development
pytest-postgresql ==6.0.0 development
pytest-shard ==0.1.2 development
python-dateutil ==2.9.0.post0 development
python-irodsclient ==2.0.1 development
python-slugify ==8.0.4 development
pytz ==2024.1 development
pywin32-ctypes ==0.2.2 development
pyyaml ==6.0.1 development
rdflib ==6.3.2 development
readme-renderer ==43.0 development
referencing ==0.35.1 development
requests ==2.32.3 development
requests-toolbelt ==1.0.0 development
responses ==0.25.3 development
rfc3986 ==2.0.0 development
rich ==13.7.1 development
rpds-py ==0.19.0 development
ruamel-yaml ==0.18.6 development
ruamel-yaml-clib ==0.2.8 development
rucio-clients ==34.5.0 development
s3transfer ==0.10.2 development
schema-salad ==8.6.20240710082410 development
scipy ==1.10.1 development
scipy ==1.13.1 development
scipy ==1.14.0 development
secretstorage ==3.3.3 development
selenium ==4.22.0 development
seletools ==1.5.0 development
setuptools ==70.3.0 development
six ==1.16.0 development
sniffio ==1.3.1 development
snowballstemmer ==2.2.0 development
sortedcontainers ==2.4.0 development
sphinx ==7.1.2 development
sphinx-rtd-theme ==2.0.0 development
sphinxcontrib-applehelp ==1.0.4 development
sphinxcontrib-devhelp ==1.0.2 development
sphinxcontrib-htmlhelp ==2.0.1 development
sphinxcontrib-jquery ==4.1 development
sphinxcontrib-jsmath ==1.0.1 development
sphinxcontrib-qthelp ==1.0.3 development
sphinxcontrib-serializinghtml ==1.1.5 development
statsd ==4.0.1 development
stevedore ==5.2.0 development
tabulate ==0.9.0 development
testfixtures ==8.3.0 development
text-unidecode ==1.3 development
tinydb ==4.8.0 development
toml ==0.10.2 development
tomli ==2.0.1 development
trio ==0.26.0 development
trio-websocket ==0.11.1 development
tuspy ==1.0.3 development
twill ==3.2.5 development
twine ==5.1.1 development
typing-extensions ==4.12.2 development
tzdata ==2024.1 development
urllib3 ==1.26.19 development
watchdog ==4.0.1 development
wcwidth ==0.2.13 development
websocket-client ==1.8.0 development
werkzeug ==3.0.3 development
wrapt ==1.16.0 development
wsproto ==1.2.0 development
yarl ==1.9.4 development
zipp ==3.19.2 development

lib/galaxy/dependencies/lint-requirements.txt pypi

flake8 *
flake8-bugbear *
ruff *

lib/galaxy/dependencies/pinned-lint-requirements.txt pypi

attrs ==23.2.0
flake8 ==7.1.0
flake8-bugbear ==24.4.26
mccabe ==0.7.0
pycodestyle ==2.12.0
pyflakes ==3.2.0
ruff ==0.6.1

lib/galaxy/dependencies/pinned-requirements.txt pypi

a2wsgi ==1.10.6
adal ==1.2.7
aiobotocore ==2.13.1
aiodataloader ==0.4.0
aiofiles ==24.1.0
aiohttp ==3.9.5
aioitertools ==0.11.0
aiosignal ==1.3.1
alembic ==1.13.2
amqp ==5.2.0
aniso8601 ==9.0.1
annotated-types ==0.7.0
anyio ==4.4.0
apispec ==6.6.1
appdirs ==1.4.4
arcp ==0.2.1
argcomplete ==3.4.0
async-timeout ==4.0.3
attmap ==0.13.2
attrs ==23.2.0
babel ==2.15.0
backports-zoneinfo ==0.2.1
bagit ==1.8.1
bagit-profile ==1.3.1
bcrypt ==4.1.3
bdbag ==1.7.3
beaker ==1.13.0
billiard ==4.2.0
bioblend ==1.3.0
bleach ==6.1.0
boltons ==24.0.0
boto ==2.49.0
botocore ==1.34.131
bx-python ==0.12.0
cachecontrol ==0.14.0
celery ==5.4.0
certifi ==2024.7.4
cffi ==1.16.0
charset-normalizer ==3.3.2
cheetah3 ==3.2.6.post1
circus ==0.18.0
click ==8.1.7
click-didyoumean ==0.3.1
click-plugins ==1.1.1
click-repl ==0.3.0
cloudauthz ==0.6.0
cloudbridge ==3.2.0
colorama ==0.4.6
coloredlogs ==15.0.1
conda-package-streaming ==0.10.0
cryptography ==42.0.8
cwl-upgrader ==1.2.11
cwl-utils ==0.33
cwltool ==3.1.20240708091337
defusedxml ==0.7.1
deprecation ==2.1.0
dictobj ==0.4
dnspython ==2.6.1
docopt ==0.6.2
docutils ==0.20.1
dparse ==0.6.3
edam-ontology ==1.25.2
email-validator ==2.2.0
exceptiongroup ==1.2.2
fastapi-slim ==0.111.0
filelock ==3.15.4
frozenlist ==1.4.1
fs ==2.4.16
fsspec ==2024.6.1
future ==1.0.0
galaxy-sequence-utils ==1.1.5
galaxy2cwl ==0.1.4
graphene ==3.3
graphene-sqlalchemy ==3.0.0rc1
graphql-core ==3.2.3
graphql-relay ==3.2.0
gravity ==1.0.6
greenlet ==3.0.3
gunicorn ==22.0.0
gxformat2 ==0.19.0
h11 ==0.14.0
h5grove ==2.2.0
h5py ==3.11.0
humanfriendly ==10.0
idna ==3.7
importlib-metadata ==8.0.0
importlib-resources ==6.4.0
isal ==1.6.1
isodate ==0.6.1
jinja2 ==3.1.4
jmespath ==1.0.1
jsonref ==1.1.0
jsonschema ==4.20.0
jsonschema-specifications ==2023.12.1
kombu ==5.3.7
lagom ==2.6.0
lxml ==5.2.2
mako ==1.3.5
markdown ==3.6
markdown-it-py ==3.0.0
markupsafe ==2.1.5
mdurl ==0.1.2
mercurial ==6.8.1
mistune ==3.0.2
mrcfile ==1.5.1
msal ==1.29.0
msgpack ==1.0.8
multidict ==6.0.5
mypy-extensions ==1.0.0
networkx ==3.1
nodeenv ==1.9.1
numpy ==1.24.4
numpy ==2.0.0
oauthlib ==3.2.2
orjson ==3.10.6
oyaml ==1.0
packaging ==24.1
paramiko ==3.4.0
parsley ==1.3
paste ==3.10.1
pastedeploy ==3.1.0
pebble ==5.0.7
pillow ==10.4.0
promise ==2.3
prompt-toolkit ==3.0.47
prov ==1.5.1
psutil ==6.0.0
pulsar-galaxy-lib ==0.15.6
pycparser ==2.22
pycryptodome ==3.20.0
pydantic ==2.8.2
pydantic-core ==2.20.1
pydantic-tes ==0.1.5
pydot ==2.0.0
pyeventsystem ==0.1.0
pyfaidx ==0.8.1.1
pygments ==2.18.0
pyjwt ==2.8.0
pykwalify ==1.8.0
pylibmagic ==0.5.0
pynacl ==1.5.0
pyparsing ==3.1.2
pyreadline3 ==3.4.1
pysam ==0.22.1
python-dateutil ==2.9.0.post0
python-magic ==0.4.27
python-multipart ==0.0.9
python3-openid ==3.2.0
pytz ==2024.1
pyyaml ==6.0.1
pyzmq ==26.0.3
rdflib ==6.3.2
referencing ==0.35.1
refgenconf ==0.12.2
regex ==2024.5.15
repoze-lru ==0.7
requests ==2.32.3
requests-oauthlib ==2.0.0
requests-toolbelt ==1.0.0
requests-unixsocket ==0.3.0
rich ==13.7.1
rocrate ==0.10.0
routes ==2.5.1
rpds-py ==0.19.0
ruamel-yaml ==0.18.6
ruamel-yaml-clib ==0.2.8
s3fs ==2024.6.1
schema-salad ==8.6.20240710082410
setuptools ==70.3.0
setuptools-scm ==5.0.2
shellescape ==3.8.1
six ==1.16.0
sniffio ==1.3.1
social-auth-core ==4.5.4
sortedcontainers ==2.4.0
spython ==0.3.13
sqlalchemy ==2.0.31
sqlitedict ==2.1.0
sqlparse ==0.5.0
starlette ==0.37.2
starlette-context ==0.3.6
starlette-graphene3 ==0.6.0
supervisor ==4.2.5
svgwrite ==1.4.3
tenacity ==8.5.0
tifffile ==2023.7.10
tinydb ==4.8.0
tomli ==2.0.1
tornado ==6.4.1
tqdm ==4.66.4
tuspy ==1.0.3
tuswsgi ==0.5.5
typing-extensions ==4.12.2
tzdata ==2024.1
tzlocal ==5.2
ubiquerg ==0.8.0
urllib3 ==1.26.19
uvicorn ==0.30.1
uvloop ==0.19.0
vine ==5.1.0
wcwidth ==0.2.13
webencodings ==0.5.1
webob ==1.8.7
whoosh ==2.7.4
wrapt ==1.16.0
yacman ==0.9.3
yarl ==1.9.4
zipp ==3.19.2
zipstream-new ==1.1.8
zstandard ==0.22.0

lib/galaxy/dependencies/pinned-typecheck-requirements.txt pypi

annotated-types ==0.7.0
boto3-stubs ==1.34.144
botocore-stubs ==1.34.144
cffi ==1.16.0
cryptography ==42.0.8
lxml-stubs ==0.5.1
mypy ==1.10.1
mypy-boto3-s3 ==1.34.138
mypy-extensions ==1.0.0
pycparser ==2.22
pydantic ==2.8.2
pydantic-core ==2.20.1
tomli ==2.0.1
types-awscrt ==0.21.0
types-bleach ==6.1.0.20240331
types-boto ==2.49.18.20240205
types-contextvars ==2.4.7.3
types-dataclasses ==0.6.6
types-docutils ==0.21.0.20240711
types-html5lib ==1.1.11.20240228
types-markdown ==3.6.0.20240316
types-paramiko ==3.4.0.20240423
types-python-dateutil ==2.9.0.20240316
types-pyyaml ==6.0.12.20240311
types-requests ==2.31.0.6
types-s3transfer ==0.10.1
types-setuptools ==71.1.0.20240813
types-six ==1.16.21.20240513
types-urllib3 ==1.26.25.14
typing-extensions ==4.12.2

lib/galaxy/job_execution/setup.py pypi

packages/app/dev-requirements.txt pypi

build * development
mypy * development
sphinx * development
twine * development

packages/app/pyproject.toml pypi

packages/app/test-requirements.txt pypi

mock-ssh-server * test
pkce * test
pykwalify * test
pytest * test
testfixtures * test

packages/auth/dev-requirements.txt pypi

build * development
mypy * development
sphinx * development
twine * development

packages/auth/pyproject.toml pypi

packages/auth/test-requirements.txt pypi

pytest * test

packages/config/dev-requirements.txt pypi

build * development
mypy * development
sphinx * development
twine * development

packages/config/pyproject.toml pypi

packages/config/test-requirements.txt pypi

gravity >=1.0 test
pytest * test

packages/data/dev-requirements.txt pypi

build * development
mypy * development
sphinx * development
twine * development

packages/data/pyproject.toml pypi

packages/data/test-requirements.txt pypi

pytest * test

packages/files/dev-requirements.txt pypi

build * development
mypy * development
sphinx * development
twine * development

packages/files/pyproject.toml pypi

packages/files/test-requirements.txt pypi

fs-gcsfs * test
pytest * test
s3fs >=2023.1.0,<2024 test

packages/job_execution/dev-requirements.txt pypi

build * development
mypy * development
sphinx * development
twine * development

packages/job_execution/pyproject.toml pypi

packages/job_execution/test-requirements.txt pypi

pytest * test

packages/job_metrics/dev-requirements.txt pypi

build * development
mypy * development
sphinx * development
twine * development

packages/job_metrics/pyproject.toml pypi

packages/job_metrics/test-requirements.txt pypi

pytest * test

packages/meta/dev-requirements.txt pypi

build * development
mypy * development
sphinx * development
twine * development

ecosyste.ms

Data

Tools

Indexes

Applications

Experiments

Open Source Science

Science Score: 13.0%

Repository

Basic Info

Statistics

Metadata Files

Owner

GitHub Events

Total

Last Year

Dependencies