openrefine-ecology-lesson
Data Cleaning with OpenRefine for Ecologists
Science Score: 77.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 3 DOI reference(s) in README -
✓Academic publication links
Links to: zenodo.org -
✓Committers with academic emails
14 of 66 committers (21.2%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (10.9%) to scientific vocabulary
Keywords
carpentries
data-carpentry
data-cleaning
data-management
ecology
english
lesson
open-educational-resources
openrefine
stable
Keywords from Contributors
spreadsheet
data-wrangling
workshop
novice
geospatial-data
carpentries-incubator
beta
puerto-rico
carpentries-lab
metagenomics
Last synced: 4 months ago
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JSON representation
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Repository
Data Cleaning with OpenRefine for Ecologists
Basic Info
- Host: GitHub
- Owner: datacarpentry
- License: other
- Default Branch: main
- Homepage: https://datacarpentry.org/OpenRefine-ecology-lesson/
- Size: 18.8 MB
Statistics
- Stars: 27
- Watchers: 16
- Forks: 112
- Open Issues: 17
- Releases: 2
Topics
carpentries
data-carpentry
data-cleaning
data-management
ecology
english
lesson
open-educational-resources
openrefine
stable
Created almost 11 years ago
· Last pushed 5 months ago
Metadata Files
Readme
Changelog
Contributing
License
Code of conduct
Citation
Authors
Zenodo
README.md
OpenRefine-ecology
Data Cleaning with OpenRefine for Ecologists Lesson for Data Carpentry
OpenRefine Version
The current version has been tested with OpenRefine 3.7.2 on May 2023.
Data set notes
- This data set is derived from The Portal Project Long-term desert ecology project data. This data file was downloaded and then modified specifically for use with OpenRefine.
- Taxon names were put back into the file.
- The number of rows was reduced to simplify the reconciliation and URL parsing exercises.
- These modifications were made in order to illustrate some features of Open Refine.
- Errors were added to the taxon names (
scientificNamefield), to demonstrate OpenRefine's ability to find likely mis-entered data. - These errors can be found using clustering algorithms on the
scientificNamecolumn, showing the power of the algorithms to find discrepancies quickly and making it simple to fix all issues found.
Contributing
We welcome all contributions to improve the lesson! Maintainers will do their best to help you if you have any questions, concerns, or experience any difficulties along the way. We'd like to ask you to familiarize yourself with our Contribution Guide.
Please see the current list of issues for ideas for contributing to this repository. For making your contribution, we use the GitHub flow, which is nicely explained in the chapter Contributing to a Project in Pro Git by Scott Chacon.
Look for the tag 
. This indicates that the maintainers will welcome a pull request fixing this issue.
Maintainers
Current Maintainers
- Luis J. Villanueva (villanueval@si.edu)
Past Authors and Maintainers
- Abigail Cabunoc
- Aleksandra Nenadic
- April M. Wright
- Betty Rozum
- Bill Mills
- Brian Yandell
- C. Titus Brown
- Cam Macdonell
- Dan Mazur
- Debbie Paul
- Erin Becker
- Francois Michonneau
- Gabriel A. Devenyi
- Greg Wilson
- Hilmar Lapp
- Hugo Tavares
- Ian Carroll
- James Allen
- James Mickley
- Jeffrey W. Hollister
- Jon Pipitone
- Jonah Duckles
- Kari L. Jordan
- Lisa Zilinski
- Maxim Belkin
- Michael Hansen
- Nick Young
- Piotr Banaszkiewicz
- Raniere Silva
- Ross Dickson
- Ryan E. Johnson
- Rémi Emonet
- Timothée Poisot
- Tracy Teal
- W. Trevor King
- Zack Brym
- dlstrong
- evanwill
- trelogan
See the Authors page for details.
Owner
- Name: Data Carpentry
- Login: datacarpentry
- Kind: organization
- Email: team@carpentries.org
- Website: https://datacarpentry.org/
- Repositories: 89
- Profile: https://github.com/datacarpentry
Workshops teaching scientists basic skills for retrieving, viewing, managing, and manipulating data in an open and reproducible way.
Citation (CITATION)
Please cite as: Deborah Paul and Cam Macdonell (eds): "Data Carpentry: Data Cleaning with OpenRefine Ecology lesson." Version 2017.04.0, April 2017, http://www.datacarpentry.org/OpenRefine-ecology-lesson/, FIXME: Add Zenodo DOI.
GitHub Events
Total
- Issues event: 2
- Watch event: 2
- Delete event: 6
- Issue comment event: 20
- Push event: 52
- Pull request review event: 1
- Pull request event: 14
- Fork event: 3
- Create event: 9
Last Year
- Issues event: 2
- Watch event: 2
- Delete event: 6
- Issue comment event: 20
- Push event: 52
- Pull request review event: 1
- Pull request event: 14
- Fork event: 3
- Create event: 9
Committers
Last synced: 5 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Luis J. Villanueva | v****l@s****u | 121 |
| Erin Becker | e****r@g****m | 104 |
| Debbie Paul | d****l@f****u | 23 |
| Tracy Teal | t****t@i****g | 20 |
| Francois Michonneau | f****u@g****m | 16 |
| maneesha sane | a****m@g****m | 10 |
| zkamvar | z****r | 10 |
| Dorothea Salo | 2****o | 7 |
| Brian Yandell | b****l@b****t | 6 |
| Paul R. Pival | p****l@u****a | 6 |
| Kari L. Jordan | k****n@m****m | 5 |
| JoshuaDull | j****l@g****m | 4 |
| Jeanine Finn | j****n@u****u | 4 |
| Dan Mazur | Q****n | 4 |
| Anelda van der Walt | a****a | 3 |
| David LeBauer | d****r@g****m | 3 |
| Kari L. Jordan | k****n@c****g | 3 |
| Nicola Soranzo | n****o@g****m | 3 |
| marijane white | m****e | 3 |
| kdmclean | 3****n | 2 |
| carmi cronje | c****e | 2 |
| Trevor Keller | t****r@n****v | 2 |
| Toby Hodges | t****s@g****m | 2 |
| Ross Dickson | r****n@d****a | 2 |
| Jeffrey W. Hollister | j****r@g****m | 2 |
| C. Titus Brown | t****s@i****g | 2 |
| Ben Companjen | b****n@c****e | 2 |
| Aleksandra Nenadic | a****c@m****k | 2 |
| Phillip Doehle | d****e@o****u | 2 |
| Alex Robillard | 5****A | 1 |
| and 36 more... | ||
Committer Domains (Top 20 + Academic)
carpentries.org: 3
idyll.org: 2
manchester.ac.uk: 2
si.edu: 1
fsu.edu: 1
brians-mbp.attlocal.net: 1
ucalgary.ca: 1
me.com: 1
utexas.edu: 1
nist.gov: 1
dal.ca: 1
companjen.name: 1
okstate.edu: 1
umd.edu: 1
illinois.edu: 1
nyu.edu: 1
wisc.edu: 1
uta.edu: 1
austin.utexas.edu: 1
duckles.org: 1
ucdavis.edu: 1
Issues and Pull Requests
Last synced: 4 months ago
All Time
- Total issues: 74
- Total pull requests: 61
- Average time to close issues: about 3 years
- Average time to close pull requests: 6 months
- Total issue authors: 42
- Total pull request authors: 28
- Average comments per issue: 2.22
- Average comments per pull request: 0.92
- Merged pull requests: 47
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 1
- Pull requests: 17
- Average time to close issues: N/A
- Average time to close pull requests: 2 days
- Issue authors: 1
- Pull request authors: 5
- Average comments per issue: 0.0
- Average comments per pull request: 1.06
- Merged pull requests: 8
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- ErinBecker (11)
- maneesha (8)
- tracykteal (8)
- villanueval (5)
- cmacdonell (2)
- anenadic (2)
- tobyhodges (2)
- cengel (2)
- jifar (1)
- nmwolf (1)
- debpaul (1)
- kta65 (1)
- bscheffler (1)
- MikeTrizna (1)
- mkweskin (1)
Pull Request Authors
- villanueval (11)
- carpentries-bot (11)
- jas58 (7)
- maneesha (6)
- marijane (4)
- ppival (2)
- tobyhodges (2)
- kleintom (2)
- tajuakins (2)
- Stonepeople (1)
- sstevens2 (1)
- kdmclean (1)
- jellenf (1)
- lyndamk (1)
- jwscutt (1)
Top Labels
Issue Labels
type:enhancement (22)
type:clarification (16)
good first issue (6)
type:template and tools (3)
help wanted (3)
status:in progress (2)
type:instructor guide (1)
status:refer to cac (1)
openrefine-3.5.0 (1)
type:formatting (1)
type:discussion (1)
openrefine-3.4.1 (1)
Pull Request Labels
type: template and tools (11)
type:enhancement (2)
status:in progress (2)
status:waiting for response (1)
type:clarification (1)
Dependencies
.github/workflows/pr-close-signal.yaml
actions
- actions/upload-artifact v3 composite
.github/workflows/pr-comment.yaml
actions
- actions/checkout v3 composite
- carpentries/actions/check-valid-pr main composite
- carpentries/actions/comment-diff main composite
- carpentries/actions/download-workflow-artifact main composite
.github/workflows/pr-post-remove-branch.yaml
actions
- carpentries/actions/download-workflow-artifact main composite
- carpentries/actions/remove-branch main composite
.github/workflows/pr-preflight.yaml
actions
- carpentries/actions/check-valid-pr main composite
- carpentries/actions/comment-diff main composite
.github/workflows/pr-receive.yaml
actions
- actions/checkout v3 composite
- actions/upload-artifact v3 composite
- carpentries/actions/check-valid-pr main composite
- carpentries/actions/setup-lesson-deps main composite
- carpentries/actions/setup-sandpaper main composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
.github/workflows/sandpaper-main.yaml
actions
- actions/checkout v3 composite
- carpentries/actions/setup-lesson-deps main composite
- carpentries/actions/setup-sandpaper main composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
.github/workflows/update-cache.yaml
actions
- actions/checkout v3 composite
- carpentries/actions/check-valid-credentials main composite
- carpentries/actions/update-lockfile main composite
- carpentries/create-pull-request main composite
- r-lib/actions/setup-r v2 composite
.github/workflows/update-workflows.yaml
actions
- actions/checkout v3 composite
- carpentries/actions/check-valid-credentials main composite
- carpentries/actions/update-workflows main composite
- carpentries/create-pull-request main composite