Data

Tools

Indexes

Applications

Experiments

Open Source Science

eg

EpiGenome Gateway - WashU EpiGenome Browser

https://github.com/epgg/eg

Science Score: 18.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (1.5%) to scientific vocabulary
Last synced: 10 months ago · JSON representation ·

Repository

EpiGenome Gateway - WashU EpiGenome Browser

Basic Info
Statistics
  • Stars: 21
  • Watchers: 9
  • Forks: 10
  • Open Issues: 70
  • Releases: 0
Created over 11 years ago · Last pushed over 4 years ago
Metadata Files
Readme License Citation

README.md

EpiGenome Gateway - WashU EpiGenome Browser

Please note this repository is for the legacy WashU Epigenome Browser.

Version History

http://wiki.wubrowse.org/Version_History

public server

http://epigenomegateway.wustl.edu/legacy/

docker

https://hub.docker.com/r/epgg/eg/

wiki

http://wiki.wubrowse.org

facebook page

https://www.facebook.com/WashUEpiGenomeBrowser

twitter

https://twitter.com/wuepgg

Owner

  • Name: EpiGenome Gateway - WashU EpiGenome Browser
  • Login: epgg
  • Kind: organization
  • Location: Washington University

WashU EpiGenome Browser

Citation (CITATIONS.txt) 

If You use this Software, please cite the following publications below:

1.	Xin Zhou, Brett Maricque, Mingchao Xie, Daofeng Li, Vasavi Sundaram, Eric A Martin, Brian C Koebbe, Cydney Nielsen, Martin Hirst, Peggy Farnham, Robert M Kuhn, Jingchun Zhu, Ivan Smirnov, W James Kent, David Haussler, Pamela A F Madden, Joseph F Costello & Ting Wang, The Human Epigenome Browser at Washington University Nature Methods 8, 989-990 (2011) (http://www.nature.com/nmeth/journal/v8/n12/full/nmeth.1772.html)
2.	Xin Zhou, Ting Wang, Using the Wash U Epigenome Browser to Examine Genome‐Wide Sequencing Data Current Protocols in Bioinformatics Unit 10.10 (2012) (https://currentprotocols.onlinelibrary.wiley.com/doi/full/10.1002/0471250953.bi1010s40)
3.	Xin Zhou, Rebecca F Lowdon, Daofeng Li, Heather A Lawson, Pamela A F Madden, Joseph F Costello, Ting Wang, Exploring long-range genome interactions using the WashU EpiGenome Browser Nature Methods 10, 375-376 (2013)  (http://www.nature.com/nmeth/journal/v10/n5/full/nmeth.2440.html)
4.	Xin Zhou, Daofeng Li, Rebecca F. Lowdon, Joseph F. Costello and Ting Wang, methylC Track: Visual integration of single-base resolution DNA methylation data on the WashU EpiGenome Browser, Bioinformatics 30 (15):2206-2207 (2014)  (http://bioinformatics.oxfordjournals.org/content/30/15/2206)
5.	Xin Zhou, Daofeng Li, Bo Zhang, Rebecca F Lowdon, Nicole B Rockweiler, Renee L Sears, Pamela A F Madden, Ivan Smirnov, Joseph F Costello and Ting Wang, Epigenomic annotation of genetic variants using the Roadmap Epigenome Browser, Nature Biotechnology (2015) doi:10.1038/nbt.3158 (http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.3158.html)

GitHub Events

Total
Last Year

Dependencies

test/package-lock.json npm
  • assertion-error 1.1.0 development
  • balanced-match 1.0.0 development
  • brace-expansion 1.1.11 development
  • browser-stdout 1.3.0 development
  • chai 4.1.2 development
  • check-error 1.0.2 development
  • commander 2.9.0 development
  • concat-map 0.0.1 development
  • debug 2.6.8 development
  • deep-eql 3.0.1 development
  • diff 3.2.0 development
  • escape-string-regexp 1.0.5 development
  • formatio 1.2.0 development
  • fs.realpath 1.0.0 development
  • get-func-name 2.0.0 development
  • glob 7.1.1 development
  • graceful-readlink 1.0.1 development
  • growl 1.9.2 development
  • has-flag 1.0.0 development
  • he 1.1.1 development
  • inflight 1.0.6 development
  • inherits 2.0.3 development
  • isarray 0.0.1 development
  • json3 3.3.2 development
  • lodash._baseassign 3.2.0 development
  • lodash._basecopy 3.0.1 development
  • lodash._basecreate 3.0.3 development
  • lodash._getnative 3.9.1 development
  • lodash._isiterateecall 3.0.9 development
  • lodash.create 3.1.1 development
  • lodash.isarguments 3.1.0 development
  • lodash.isarray 3.0.4 development
  • lodash.keys 3.1.2 development
  • lolex 1.6.0 development
  • minimatch 3.0.4 development
  • minimist 0.0.8 development
  • mkdirp 0.5.1 development
  • mocha 3.5.3 development
  • ms 2.0.0 development
  • native-promise-only 0.8.1 development
  • once 1.4.0 development
  • path-is-absolute 1.0.1 development
  • path-to-regexp 1.7.0 development
  • pathval 1.1.0 development
  • samsam 1.3.0 development
  • sinon 2.4.1 development
  • sinon-chai 2.14.0 development
  • supports-color 3.1.2 development
  • text-encoding 0.6.4 development
  • type-detect 4.0.8 development
  • wrappy 1.0.2 development
test/package.json npm
  • chai ^4.0.2 development
  • mocha ^3.4.2 development
  • sinon ^2.3.5 development
  • sinon-chai ^2.11.0 development