Data Science for Biomedical Scientists: Introduction to Data Science and AI for senior researchers

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Thanks for contributing to The Carpentries Incubator! This repository is part of the Data Science for Biomedical Scientists: The Turing/Crick partnership project. This project will facilitate the development of training resources on data science practices for senior researchers, group leaders, late PhD/Postdocs and mid- to late-career biomedical scientists. Materials developed through this project will enable (1) a foundational understanding of AI and data science in the context of biosciences and (2) recommendations for managing (as well as supervising and facilitating) open and reproducible research for the wider biology community.

This is one of the two masterclasses being developed under Data Science for Biomedical Scientists: the Turing/Crick partnership project. For the second masterclass, please visit: https://github.com/carpentries-incubator/managing-computational-projects.

For details about the project and track management-related information, please the Project Management Repository.

Developers and Maintainer(s)

Current developers and maintainers of these lessons are:

• Malvika Sharan

Past developers and maintainers are: * Lydia France * Arron Lacey * Federico Nanni

External Reviewers**

• Jo Havemann, Access 2 Perspective
• Julien Colomb, Humboldt-Universität zu Berlin

The Carpentries Incubator Programme

This repository provides a blank starting point for lessons to be developed here.

A member of the Carpentries Curriculum Team will work with you to get your lesson listed on the Community Developed Lessons page and make sure you have everything you need to begin developing your new lesson.

A member of the Carpentries Curriculum Team will work with you to get your lesson listed on the Community Developed Lessons page and make sure you have everything you need to begin developing your new lesson.

What to do next

Before you begin developing your new lesson, here are a few things we recommend you do:

• [ ] Decide on a title for your new lesson! Once you've chosen a new title, you can set the value for lesson_title in _config.yml
• [ ] Add the URL to your built lesson pages to the repository description*
• [ ] Add relevant topic tags to your lesson repository.
• [ ] Fill in the fields marked FIXME in:
  • this README
  • _config.yml
• [ ] If you're going to be developing lesson material for the first time according to our design principles, consider reading the Carpentries Curriculum Development Handbook
• [ ] Consult the Lesson Example website to find out more about working with the lesson template
• [ ] If you are planning to write your lesson in RMarkdown, create a main branch and set this as the default branch in your repository settings
• [ ] Update this README with relevant information about your lesson and delete this section

* To set the URL on GitHub, click the gear wheel button next to About on the right of the repository landing page. The lesson URL structure is https://carpentries-incubator.github.io/: a repository at https://github.com/carpentries-incubator/new-lesson/ will have pages at the lesson URL https://carpentries-incubator.github.io/new-lesson/.

Contributing

We welcome all contributions to improve the lesson! Maintainers will do their best to help you if you have any questions, concerns, or experience any difficulties along the way.

We'd like to ask you to familiarize yourself with our Contribution Guide and have a look at the more detailed guidelines on proper formatting, ways to render the lesson locally, and even how to write new episodes.

Please see the current list of [issues][FIXME] for ideas for contributing to this repository. For making your contribution, we use the GitHub flow, which is nicely explained in the chapter Contributing to a Project in Pro Git by Scott Chacon. Look for the tag . This indicates that the maintainers will welcome a pull request fixing this issue.

Authors

A list of contributors to the lesson can be found in AUTHORS

Citation

To cite this lesson, please consult with CITATION

Contributors ✨

Thanks goes to these wonderful people (emoji key):

Arron Lacey 🤔 🖋

claudioangione 👀 🖋

Kasra Hosseini 👀 🖋

Lydia France 🤔 🖋

Federico Nanni 🤔 🖋

Malvika Sharan 🔍 🤔 🧑‍🏫 📆 📋

Toby Hodges 🚇 💬

This project follows the all-contributors specification. Contributions of any kind welcome!