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historic_pheno_data_analysis

Analysis of wheat and barley historical data from 9 AGENT genebanks.

https://github.com/agentproject/historic_pheno_data_analysis

Science Score: 67.0%

This score indicates how likely this project is to be science-related based on various indicators:

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    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 5 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ○
    Academic email domains
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    Institutional organization owner
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    JOSS paper metadata
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    Scientific vocabulary similarity
    Low similarity (4.4%) to scientific vocabulary

Keywords

data-curation phenotyping plant-genetic-resources plant-sciences
Last synced: 6 months ago · JSON representation ·

Repository

Analysis of wheat and barley historical data from 9 AGENT genebanks.

Basic Info
  • Host: GitHub
  • Owner: AGENTproject
  • License: cc-by-4.0
  • Language: Jupyter Notebook
  • Default Branch: main
  • Homepage:
  • Size: 159 MB
Statistics
  • Stars: 0
  • Watchers: 2
  • Forks: 0
  • Open Issues: 0
  • Releases: 1
Topics
data-curation phenotyping plant-genetic-resources plant-sciences
Created over 2 years ago · Last pushed 10 months ago
Metadata Files
Readme Citation

README.md

historicphenodata_analysis

DOI

SWH

Analysis of wheat and barley historic data from 9 AGENT genebanks : Calculation of heritability and BLUEs of traits of agronomic interest, in an easy-to-reuse manner thanks to notebooks and custom functions.

The analysis methods come from the article of Philipp et al. (2018) Leveraging the Use of Historical Data Gathered During Seed Regeneration of an ex Situ Genebank Collection of Wheat.

The main packages used are:

Acknowledgements:

  • to the IPK Quantitative Genetics group, for the hospitality and guidance.
  • to the CREA-CI and INIA genebanks, for their hospitality, and to all genebanks for their collaboration.

Owner

  • Name: EU H2020 AGENT project
  • Login: AGENTproject
  • Kind: organization

Citation (CITATION.cff) 

cff-version: 1.2.0
title: AGENTproject/historic_pheno_data_analysis
license: CC-BY-4.0
type: software
abstract: AGENT project historical phenotypic data analysis and curation
identifiers:
  - type: doi
    value: 10.5281/zenodo.15343013
  - type: swh
    value: 'swh:1:dir:a95895b0bfdbf346dbb31d656c9ef446c056caec'
message: If you use this software, please cite it using the metadata from this file.
authors:
  - given-names: Erwan
    family-names: Le Floch
    affiliation: Université Paris-Saclay, INRAE, Institut Français de Bioinformatique (IFB), BioinfOmics, URGI, 78026, Versailles, France
    orcid: 'https://orcid.org/0000-0002-1010-6859'
  - given-names: Marcel Oliver
    family-names: Berkner
    affiliation: Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany
    orcid: 'https://orcid.org/0000-0003-2262-5098'
  - given-names: Jochen Christoph
    family-names: Reif
    affiliation: Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany
    orcid: 'https://orcid.org/0000-0002-6742-265X'
keywords:
  - plant sciences
  - data curation
  - phenotyping
  - plant genetic resources

GitHub Events

Total
  • Release event: 1
  • Push event: 5
  • Public event: 1
  • Create event: 2
Last Year
  • Release event: 1
  • Push event: 5
  • Public event: 1
  • Create event: 2

Dependencies

environment.yml pypi