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hereditary-stratigraph-concept

Proof of concept work for hereditary stratigraph method

https://github.com/mmore500/hereditary-stratigraph-concept

Science Score: 44.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
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    Institutional organization owner
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    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (10.3%) to scientific vocabulary
Last synced: 6 months ago · JSON representation ·

Repository

Proof of concept work for hereditary stratigraph method

Basic Info
  • Host: GitHub
  • Owner: mmore500
  • Language: HTML
  • Default Branch: master
  • Size: 514 MB
Statistics
  • Stars: 0
  • Watchers: 2
  • Forks: 1
  • Open Issues: 3
  • Releases: 3
Created about 4 years ago · Last pushed 11 months ago
Metadata Files
Readme Contributing Code of conduct Citation

README.md

Hereditary Stratigraph Proof of Concept

version GitHub Actions Status Documentation Status documentation coverage code coverage status dotos GitHub stars

Exploratory work on a method to enable phylogenetic inference without centralized tracking.

Check out the live in-browser web app at https://mmore500.github.io/hereditary-stratigraph-concept.

Features

  • TODO

cookie monster example

Credits

This package was created with [Cookiecutter][https://github.com/audreyr/cookiecutter] and the [mmore500/cookiecutter-dishtiny-project][https://github.com/mmore500/cookiecutter-dishtiny-project] project template.

This package uses Empirical, a library of tools for scientific software development, with emphasis on also being able to build web interfaces using Emscripten.

Owner

  • Name: Matthew Andres Moreno
  • Login: mmore500
  • Kind: user
  • Location: East Lansing, MI
  • Company: @devosoft

doctoral student, Computer Science and Engineering at Michigan State University

Citation (CITATION.cff) 

date-released: 2022
license: MIT license
version: 0.3.0
authors:
  - affiliation: Michigan State University
    family-names: Moreno
    given-names: Matthew Andres
    orcid: 'https://orcid.org/0000-0003-4726-4479'
  - affiliation: Michigan State University
    family-names: Ofria
    given-names: Charles
    orcid: 'https://orcid.org/0000-0003-2924-1732'

GitHub Events

Total
  • Push event: 23
Last Year
  • Push event: 23

Issues and Pull Requests

Last synced: about 1 year ago

All Time
  • Total issues: 5
  • Total pull requests: 0
  • Average time to close issues: 7 days
  • Average time to close pull requests: N/A
  • Total issue authors: 1
  • Total pull request authors: 0
  • Average comments per issue: 0.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • mmore500 (5)
Pull Request Authors
Top Labels
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Dependencies

binder/requirements.txt pypi
  • 181 dependencies
docs/requirements.txt pypi
  • breathe ==4.19.2
  • coverxygen ==1.5.0
  • exhale ==0.2.3
  • myst-parser ==0.12.9
  • sphinx ==3.1.2
  • sphinx-rtd-theme ==0.5.0
  • sphinxemoji ==0.1.8
requirements.in pypi
  • aiobotocore ==1.1.2
  • alifedata-phyloinformatics-convert ==0.6.0
  • anytree ==2.8.0
  • beautifulsoup4 ==4.10.0
  • boto3 ==1.14.44
  • breathe ==4.19.2
  • coverxygen ==1.5.0
  • deprecation ==2.1.0
  • endomill ==0.1.3
  • exdown ==0.7.0
  • exhale ==0.2.3
  • frozendict ==1.2
  • gitpython ==3.1.14
  • gmpy ==1.17
  • hstrat ==0.3.2
  • idna ==2.8
  • image-slicer ==2.1.1
  • interval-search ==0.1.2
  • ipykernel ==5.5.3
  • ipython ==7.16.1
  • iterdub ==0.2.0
  • iterify ==0.1.0
  • iterpop ==0.4.0
  • j2cli ==0.3.10
  • jupyter_client ==6.1.12
  • jupyter_core ==4.7.1
  • keyname ==0.4.1
  • markdown-it-py ==0.6.2
  • markdown2 ==2.3.9
  • matplotlib ==3.3.2
  • mdit-py-plugins ==0.2.6
  • myst-parser ==0.13.5
  • natsort ==8.1.0
  • nb-clean ==2.0.2
  • nbconvert ==5.6.1
  • nbmetalog ==0.2.6
  • networkx ==2.5
  • nose ==1.3.7
  • numpy ==1.21.5
  • opencv-python ==4.5.1.48
  • opytional ==0.1.0
  • osfclient ==0.0.5
  • pandas ==1.1.2
  • phylotrackpy ==0.1.1
  • python-slugify ==6.1.1
  • s3fs ==0.5.1
  • scipy ==1.5.4
  • seaborn ==0.11.0
  • sphinx ==3.1.2
  • sphinx-rtd-theme ==0.5.0
  • sphinxemoji ==0.1.8
  • statsmodels ==0.12.2
  • sympy ==1.5.1
  • teeplot ==0.2.0
  • toml ==0.10.1
  • tqdm ==4.50.2
  • traitlets ==5.1.1
  • tweepy ==3.10.0
requirements.txt pypi
  • 181 dependencies
.github/workflows/CI.yml actions
  • JamesIves/github-pages-deploy-action 4.0.0 composite
  • actions/checkout v2 composite
  • actions/upload-artifact v2 composite
  • codecov/codecov-action v1 composite
  • docker/build-push-action v1 composite
  • fregante/setup-git-user v1 composite
Dockerfile docker
  • mmore500/dishtiny sha-7f3f5c8 build
tex/Dockerfile docker
  • mmore500/docker-texlive-full sha-ea45eb5 build