deltabreed
Open source data management software for specialty crop and animal breeders.
Science Score: 44.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
-
○Academic publication links
-
○Academic email domains
-
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (10.6%) to scientific vocabulary
Repository
Open source data management software for specialty crop and animal breeders.
Basic Info
- Host: GitHub
- Owner: Breeding-Insight
- License: apache-2.0
- Default Branch: main
- Size: 1.8 MB
Statistics
- Stars: 3
- Watchers: 3
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
DeltaBreed
Open source data management software for specialty crop and animal breeders.
Developed by Breeding Insight with funding from the U.S. Department of Agriculture (USDA) Agricultural Research Service (ARS) through Cornell University.
Public Sandbox | User Manual | Screenshots | Running DeltaBreed | Contact Us
Try DeltaBreed
The easiest way to try DeltaBreed is to use our public sandbox. The User Manual, which describes how to use DeltaBreed's features, may be viewed here.
Please note: - All submitted data are public; do not submit private data on the public sandbox. - The public sandbox database is routinely reset and submitted data may be removed without notice.
Running DeltaBreed
To run an instance of DeltaBreed on one's local machine, the bi-docker-stack repository can be used to run DeltaBreed via docker containers. The README in said repository contains a guide for setting up and running DeltaBreed.
Source Code
DeltaBreed consists of several components. Our Java backend is Breeding-Insight/bi-api, our Vue frontend is Breeding-Insight/bi-web, and the easiest way to run the app is with our docker compose configurations, Breeding-Insight/bi-docker-stack. Additional repositories that DeltaBreed depends on include our Java BrAPI client, Breeding-Insight/brapi, our fork of the BrAPI Java Server, Breeding-Insight/brapi-Java-TestServer, and our browser-based test automation framework, Breeding-Insight/taf.
Screenshots
View the User Manual for more screenshots and detailed descriptions of DeltaBreed's features.
Germplasm Management
Ontology Management
Experiments & Observations
Genotypic Data Management (Beta)
Sample Management
BrAPI Integration
Owner
- Name: Breeding Insight
- Login: Breeding-Insight
- Kind: organization
- Website: https://breedinginsight.org
- Repositories: 12
- Profile: https://github.com/Breeding-Insight
Combining genomics and informatics to accelerate genetic gains.
Citation (CITATION.cff)
# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!
cff-version: 1.2.0
title: DeltaBreed
message: >-
If you use this software, please cite it using the
metadata from this file.
type: software
authors:
- name: Breeding insight
address: Cornell University
city: Ithaca
country: US
website: 'https://breedinginsight.org/'
repository-code: 'https://github.com/Breeding-Insight/DeltaBreed'
url: 'https://breedinginsight.org/'
abstract: >
DeltaBreed is a BrAPI-centric breeding management system
made by Breeding Insight for USDA-ARS specialty crop and
animal breeders.
keywords:
- >-
information system, breeding, phenotyping, genotyping,
pedigree, samples, experiments, observations, ontology
license: Apache-2.0
GitHub Events
Total
- Watch event: 1
- Push event: 1
- Public event: 1
Last Year
- Watch event: 1
- Push event: 1
- Public event: 1