PRISMA

Generate checklists and flow diagrams based on the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA)

https://github.com/cecoeco/prisma.jl

Science Score: 57.0%

This score indicates how likely this project is to be science-related based on various indicators:

✓
CITATION.cff file
Found CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
✓
.zenodo.json file
Found .zenodo.json file
✓
DOI references
Found 8 DOI reference(s) in README
○
Academic publication links
○
Committers with academic emails
○
Institutional organization owner
○
JOSS paper metadata
○
Scientific vocabulary similarity
Low similarity (13.1%) to scientific vocabulary

Keywords

checklist data-visualization flow-diagram meta-analyses nlp research systematic-reviews

Keywords from Contributors

hybrid-differential-equations exoplanet mesh neural-sde interpretability finite-volume ode pinn interactive numeric

Last synced: 6 months ago · JSON representation ·

Repository

Generate checklists and flow diagrams based on the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA)

Basic Info

Host: GitHub
Owner: cecoeco
License: mit
Language: TypeScript
Default Branch: main
Homepage: https://prisma-jl.onrender.com
Size: 6.01 MB

Statistics

Stars: 2
Watchers: 1
Forks: 1
Open Issues: 0
Releases: 8

Topics

checklist data-visualization flow-diagram meta-analyses nlp research systematic-reviews

Created almost 2 years ago · Last pushed about 1 year ago

Metadata Files

Readme License Citation

PRISMA.jl

PRISMA.jl is a Julia package and web application powered by React.js and Oxygen.jl for generating checklists and flow diagrams based on the 2020 Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) statement (Page et al., 2021).

Features:

functions to generate 2020 PRISMA checklists using natural language processing
functions to upload study data to create 2020 PRISMA flow diagrams via Graphviz
an interactive web app requiring zero programming knowledge

Installation: use this command in the Julia REPL: using Pkg; Pkg.add("PRISMA")

Documentation:

Examples:

create and save a flow diagram:

```julia using PRISMA: flowdiagram, flowdiagram_save

flowdiagramsave("example.svg", flowdiagram(sideboxes=false)) ```

show output:

![flow diagram](docs/src/assets/example.svg)

view empty checklist data:

```julia using PRISMA: checklist_dataframe

println(checklist_dataframe()) ```

show output:

``` 49×4 DataFrame Row │ Section and Topic Item # Checklist Item Location where item is reported │ String String String String ─────┼─────────────────────────────────────────────────────────────────────────────────────────────────────────────── 1 │ TITLE 2 │ Title 1 Identify the report as a systema… 3 │ ABSTRACT 4 │ Abstract 2 See the PRISMA 2020 for Abstract… 5 │ INTRODUCTION 6 │ Rationale 3 Describe the rationale for the r… 7 │ Objectives 4 Provide an explicit statement of… 8 │ METHODS 9 │ Eligibility criteria 5 Specify the inclusion and exclus… 10 │ Information sources 6 Specify all databases, registers… 11 │ Search strategy 7 Present the full search strategi… 12 │ Selection process 8 Specify the methods used to deci… 13 │ Data collection process 9 Specify the methods used to coll… 14 │ Data items 10a List and define all outcomes for… 15 │ 10b List and define all other variab… 16 │ Study risk of bias assessment 11 Specify the methods used to asse… 17 │ Effect measures 12 Specify for each outcome the eff… 18 │ Synthesis methods 13a Describe the processes used to d… 19 │ 13b Describe any methods required to… 20 │ 13c Describe any methods used to tab… 21 │ 13d Describe any methods used to syn… 22 │ 13e Describe any methods used to exp… 23 │ 13f Describe any sensitivity analyse… 24 │ Reporting bias assessment 14 Describe any methods used to ass… 25 │ Certainty assessment 15 Describe any methods used to ass… 26 │ RESULTS 27 │ Study selection 16a Describe the results of the sear… 28 │ 16b Cite studies that might appear t… 29 │ Study characteristics 17 Cite each included study and pre… 30 │ Risk of bias in studies 18 Present assessments of risk of b… 31 │ Results of individual studies 19 For all outcomes, present, for e… 32 │ Results of syntheses 20a For each synthesis, briefly summ… 33 │ 20b Present results of all statistic… 34 │ 20c Present results of all investiga… 35 │ 20d Present results of all sensitivi… 36 │ Reporting biases 21 Present assessments of risk of b… 37 │ Certainty of evidence 22 Present assessments of certainty… 38 │ DISCUSSION 39 │ Discussion 23a Provide a general interpretation… 40 │ 23b Discuss any limitations of the e… 41 │ 23c Discuss any limitations of the r… 42 │ 23d Discuss implications of the resu… 43 │ OTHER INFORMATION 44 │ Registration and protocol 24a Provide registration information… 45 │ 24b Indicate where the review protoc… 46 │ 24c Describe and explain any amendme… 47 │ Support 25 Describe sources of financial or… 48 │ Competing interests 26 Identify the report as a systema… 49 │ Availability of data, code and o… 27 Report which of the following ar… ```

Citing: please consider citing PRISMA.jl and giving the GitHub repository a star, if possible.

The citation information may be found in the CITATION.bib file within the repository

References:

Bezanson, J., Edelman, A., Karpinski, S., & Shah, V. B. (2017). Julia: A fresh approach to numerical computing. SIAM Review, 59(1), 65–98. https://doi.org/10.1137/141000671

Bouchet-Valat, M., & Kamiński, B. (2023). DataFrames.jl: Flexible and Fast Tabular Data in Julia. Journal of Statistical Software, 107(4), 1–32. https://doi.org/10.18637/jss.v107.i04

Page M J, McKenzie J E, Bossuyt P M, Boutron I, Hoffmann T C, Mulrow C D et al. (2021). The PRISMA 2020 statement: An updated guideline for reporting systematic reviews. Systematic Reviews, 10(1), 89. https://doi.org/10.1186/s13643-021-01626-4

Owner

Login: cecoeco
Kind: user

Repositories: 2
Profile: https://github.com/cecoeco

Citation (CITATION.bib)

@software{PRISMA.jl,
  author = {Maples, Ceco Elijah},
  title  = {PRISMA.jl: Generate checklists and flow diagrams based on the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA)},
  url    = {https://github.com/cecoeco/PRISMA.jl}
}

GitHub Events

Total

Release event: 1
Delete event: 8
Issue comment event: 1
Push event: 23
Pull request event: 2
Create event: 2

Last Year

Release event: 1
Delete event: 8
Issue comment event: 1
Push event: 23
Pull request event: 2
Create event: 2

Committers

Last synced: 10 months ago

All Time

Total Commits: 88
Total Committers: 3
Avg Commits per committer: 29.333
Development Distribution Score (DDS): 0.08

Past Year

Commits: 88
Committers: 3
Avg Commits per committer: 29.333
Development Distribution Score (DDS): 0.08

Top Committers

Name	Email	Commits
webofceco	m**9@g**m	81
CompatHelper Julia	c**y@j**g	5
dependabot[bot]	4****]	2

Committer Domains (Top 20 + Academic)

julialang.org: 1

Issues and Pull Requests

Last synced: 11 months ago

All Time

Total issues: 0
Total pull requests: 0
Average time to close issues: N/A
Average time to close pull requests: N/A
Total issue authors: 0
Total pull request authors: 0
Average comments per issue: 0
Average comments per pull request: 0
Merged pull requests: 0
Bot issues: 0
Bot pull requests: 0

Past Year

Issues: 0
Pull requests: 0
Average time to close issues: N/A
Average time to close pull requests: N/A
Issue authors: 0
Pull request authors: 0
Average comments per issue: 0
Average comments per pull request: 0
Merged pull requests: 0
Bot issues: 0
Bot pull requests: 0

View more stats

Top Authors

Issue Authors

JuliaTagBot (1)

Pull Request Authors

github-actions[bot] (8)
dependabot[bot] (2)
longemen3000 (1)

Top Labels

Issue Labels

Pull Request Labels

dependencies (2)

Packages

Total packages: 1
Total downloads: unknown

Total dependent packages: 0
Total dependent repositories: 0
Total versions: 9

juliahub.com: PRISMA

Generate checklists and flow diagrams based on the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA)

Homepage: https://prisma-jl.onrender.com
Documentation: https://docs.juliahub.com/General/PRISMA/stable/
License: MIT
Latest release: 0.0.9
published over 1 year ago

Versions: 9
Dependent Packages: 0
Dependent Repositories: 0

Rankings

Dependent repos count: 3.2%

Downloads: 3.8%

Forks count: 14.4%

Average: 15.1%

Dependent packages count: 16.3%

Stargazers count: 37.6%

Last synced: 6 months ago

Dependencies

app/backend/Dockerfile docker

julia 1.10 build

app/frontend/package-lock.json npm

134 dependencies

app/frontend/package.json npm

@solidjs/router ^0.12.5
sass ^1.71.1
solid-js ^1.8.11
vite ^5.1.5
vite-plugin-solid ^2.8.2

PRISMA

Science Score: 57.0%

Keywords

Keywords from Contributors

Repository

Basic Info

Statistics

Topics

Metadata Files

README.md

PRISMA.jl

Owner

Citation (CITATION.bib)

GitHub Events

Total

Last Year

Committers

All Time

Past Year

Top Committers

Committer Domains (Top 20 + Academic)

Issues and Pull Requests

All Time

Past Year

Top Authors

Issue Authors

Pull Request Authors

Top Labels

Issue Labels

Pull Request Labels

Packages

juliahub.com: PRISMA

Rankings

Dependencies