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Recent Releases of treeple

treeple - v0.10.3

What's Changed

  • FIX implement additional fix for pruning by @PSSF23 in https://github.com/neurodata/treeple/pull/350
  • FIX revert cython changes by @PSSF23 in https://github.com/neurodata/treeple/pull/351
  • FIX attempt to correct pruning by @YuxinB in https://github.com/neurodata/treeple/pull/352

Full Changelog: https://github.com/neurodata/treeple/compare/v0.10.2...v0.10.3

- Jupyter Notebook
Published by PSSF23 12 months ago

treeple - v0.10.2

What's Changed

  • FIX add attribute for kernel method by @PSSF23 in https://github.com/neurodata/treeple/pull/348

Full Changelog: https://github.com/neurodata/treeple/compare/v0.10.1...v0.10.2

- Jupyter Notebook
Published by PSSF23 about 1 year ago

treeple - v0.10.1

What's Changed

  • FIX remove regressor multi_label tag by @PSSF23 in https://github.com/neurodata/treeple/pull/339
  • ENH add kernel method parameter on posterior predictions by @YuxinB in https://github.com/neurodata/treeple/pull/345
  • DOC update package version in meson build by @PSSF23 in https://github.com/neurodata/treeple/pull/346

Full Changelog: https://github.com/neurodata/treeple/compare/v0.10.0...v0.10.1

- Jupyter Notebook
Published by PSSF23 about 1 year ago

treeple - v0.10.0.dev0

What's Changed

  • [MNT] updates for release by @SUKI-O in https://github.com/neurodata/treeple/pull/297
  • MAINT Fix meson build options by @adam2392 in https://github.com/neurodata/treeple/pull/307
  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/neurodata/treeple/pull/304
  • added bottleneck for nan calculations by @ryanhausen in https://github.com/neurodata/treeple/pull/306
  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/neurodata/treeple/pull/308
  • Bump pypa/cibuildwheel from 2.19.2 to 2.20.0 by @dependabot in https://github.com/neurodata/treeple/pull/309
  • MAINT Remove irrelevant files by @adam2392 in https://github.com/neurodata/treeple/pull/312
  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/neurodata/treeple/pull/313
  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/neurodata/treeple/pull/315
  • MAINT Remove NPY deprecated api warnings during meson build by @adam2392 in https://github.com/neurodata/treeple/pull/318
  • Update developer docs to ensure compatibility with latest scikit-learn. by @ryanhausen in https://github.com/neurodata/treeple/pull/319
  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/neurodata/treeple/pull/320
  • MAINT Clean up Cython files by @adam2392 in https://github.com/neurodata/treeple/pull/321
  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/neurodata/treeple/pull/324
  • FEA Add warning to control against runtime might when wanting to run comight by @adam2392 in https://github.com/neurodata/treeple/pull/323
  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/neurodata/treeple/pull/325
  • Bump pypa/cibuildwheel from 2.20.0 to 2.21.2 by @dependabot in https://github.com/neurodata/treeple/pull/332
  • Sparse Implementation of build_coleman_forest plus a fix for bottleneck import by @ryanhausen in https://github.com/neurodata/treeple/pull/317
  • FEA Implement pruning using honest subsample data to fit the leaves by @adam2392 in https://github.com/neurodata/treeple/pull/286

New Contributors

  • @ryanhausen made their first contribution in https://github.com/neurodata/treeple/pull/306

Full Changelog: https://github.com/neurodata/treeple/compare/v0.9.1...v0.10.0

- Jupyter Notebook
Published by PSSF23 about 1 year ago

treeple - v0.9.1

What's Changed

  • [RELEASE] V0.7.0 by @adam2392 in https://github.com/neurodata/treeple/pull/232
  • [ENH, FIX] Allow scalingfactor in trunkmixture_classification to be specified by @adam2392 in https://github.com/neurodata/treeple/pull/234
  • bug fixes for trunk sims by @sampan501 in https://github.com/neurodata/treeple/pull/236
  • Release v0.7.1 by @adam2392 in https://github.com/neurodata/treeple/pull/238
  • MAINT Remove requirements files by @adam2392 in https://github.com/neurodata/treeple/pull/240
  • Bump softprops/action-gh-release from 1 to 2 by @dependabot in https://github.com/neurodata/treeple/pull/243
  • Bump pypa/cibuildwheel from 2.16.5 to 2.17.0 by @dependabot in https://github.com/neurodata/treeple/pull/244
  • MAINT Adding meson compiler directives by @adam2392 in https://github.com/neurodata/treeple/pull/242
  • MAINT Update submodule commit and remove cnp imports where possible by @adam2392 in https://github.com/neurodata/treeple/pull/249
  • DOC Fix docs by @adam2392 in https://github.com/neurodata/treeple/pull/252
  • FIX correct simulation class label for linear by @PSSF23 in https://github.com/neurodata/treeple/pull/254
  • ENH add treeple tutorials to website by @PSSF23 in https://github.com/neurodata/treeple/pull/256
  • FIX reverse simulation labels by @PSSF23 in https://github.com/neurodata/treeple/pull/258
  • FIX correct bug for tree posteriors by @PSSF23 in https://github.com/neurodata/treeple/pull/259
  • ENH optimize & add treeple tutorial figures by @PSSF23 in https://github.com/neurodata/treeple/pull/260
  • FIX Raise error when missing-values encountered in scikit-tree trees by @adam2392 in https://github.com/neurodata/treeple/pull/264
  • DOC update tutorial figure & format & ENH optimize p value calculation by @PSSF23 in https://github.com/neurodata/treeple/pull/273
  • change ValueError to RuntimeWarning when n_dim < n_informative by @sampan501 in https://github.com/neurodata/treeple/pull/279
  • DOC optimize documentation & change function name by @PSSF23 in https://github.com/neurodata/treeple/pull/280
  • MAINT Fix CI by @adam2392 in https://github.com/neurodata/treeple/pull/281
  • Bump pypa/cibuildwheel from 2.17.0 to 2.18.1 by @dependabot in https://github.com/neurodata/treeple/pull/277
  • MAINT HonestForestClassifier now has bootstrap=True as the default. And removing old MIGHT code by @adam2392 in https://github.com/neurodata/treeple/pull/274
  • MAINT Try coverage config specify pyproject.toml by @adam2392 in https://github.com/neurodata/treeple/pull/285
  • Bump pypa/cibuildwheel from 2.18.1 to 2.19.1 by @dependabot in https://github.com/neurodata/treeple/pull/284
  • ENH, FIX i) build_oob_forest backwards compatiblility with sklearn and ii) HonestForest stratification during bootstrap by @adam2392 in https://github.com/neurodata/treeple/pull/283
  • RELEASE Updating to v0.8 release by @adam2392 in https://github.com/neurodata/treeple/pull/288
  • Rename the pkg to "treeple" by @SUKI-O in https://github.com/neurodata/treeple/pull/292
  • Bump pypa/cibuildwheel from 2.19.1 to 2.19.2 by @dependabot in https://github.com/neurodata/treeple/pull/294
  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/neurodata/treeple/pull/293
  • MAINT Update submodulev3 by @adam2392 in https://github.com/neurodata/treeple/pull/295
  • FIX ignore nan values when summing posteriors by @PSSF23 in https://github.com/neurodata/treeple/pull/291
  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/neurodata/treeple/pull/298
  • DOC Update documentation by @adam2392 in https://github.com/neurodata/treeple/pull/299
  • MNT Remove unnecessary Jupyter notebook folders out of the repo by @adam2392 in https://github.com/neurodata/treeple/pull/300
  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/neurodata/treeple/pull/301

New Contributors

  • @pre-commit-ci made their first contribution in https://github.com/neurodata/treeple/pull/293

Full Changelog: https://github.com/neurodata/treeple/compare/v0.7.0...v0.9.1

- Jupyter Notebook
Published by SUKI-O over 1 year ago

treeple - v0.8.0

What's Changed

  • [RELEASE] V0.7.0 by @adam2392 in https://github.com/neurodata/scikit-tree/pull/232
  • [ENH, FIX] Allow scalingfactor in trunkmixture_classification to be specified by @adam2392 in https://github.com/neurodata/scikit-tree/pull/234
  • bug fixes for trunk sims by @sampan501 in https://github.com/neurodata/scikit-tree/pull/236
  • Release v0.7.1 by @adam2392 in https://github.com/neurodata/scikit-tree/pull/238
  • MAINT Remove requirements files by @adam2392 in https://github.com/neurodata/scikit-tree/pull/240
  • Bump softprops/action-gh-release from 1 to 2 by @dependabot in https://github.com/neurodata/scikit-tree/pull/243
  • Bump pypa/cibuildwheel from 2.16.5 to 2.17.0 by @dependabot in https://github.com/neurodata/scikit-tree/pull/244
  • MAINT Adding meson compiler directives by @adam2392 in https://github.com/neurodata/scikit-tree/pull/242
  • MAINT Update submodule commit and remove cnp imports where possible by @adam2392 in https://github.com/neurodata/scikit-tree/pull/249
  • DOC Fix docs by @adam2392 in https://github.com/neurodata/scikit-tree/pull/252
  • FIX correct simulation class label for linear by @PSSF23 in https://github.com/neurodata/scikit-tree/pull/254
  • ENH add treeple tutorials to website by @PSSF23 in https://github.com/neurodata/scikit-tree/pull/256
  • FIX reverse simulation labels by @PSSF23 in https://github.com/neurodata/scikit-tree/pull/258
  • FIX correct bug for tree posteriors by @PSSF23 in https://github.com/neurodata/scikit-tree/pull/259
  • ENH optimize & add treeple tutorial figures by @PSSF23 in https://github.com/neurodata/scikit-tree/pull/260
  • FIX Raise error when missing-values encountered in scikit-tree trees by @adam2392 in https://github.com/neurodata/scikit-tree/pull/264
  • DOC update tutorial figure & format & ENH optimize p value calculation by @PSSF23 in https://github.com/neurodata/scikit-tree/pull/273
  • change ValueError to RuntimeWarning when n_dim < n_informative by @sampan501 in https://github.com/neurodata/scikit-tree/pull/279
  • DOC optimize documentation & change function name by @PSSF23 in https://github.com/neurodata/scikit-tree/pull/280
  • MAINT Fix CI by @adam2392 in https://github.com/neurodata/scikit-tree/pull/281
  • Bump pypa/cibuildwheel from 2.17.0 to 2.18.1 by @dependabot in https://github.com/neurodata/scikit-tree/pull/277
  • MAINT HonestForestClassifier now has bootstrap=True as the default. And removing old MIGHT code by @adam2392 in https://github.com/neurodata/scikit-tree/pull/274
  • MAINT Try coverage config specify pyproject.toml by @adam2392 in https://github.com/neurodata/scikit-tree/pull/285
  • Bump pypa/cibuildwheel from 2.18.1 to 2.19.1 by @dependabot in https://github.com/neurodata/scikit-tree/pull/284
  • ENH, FIX i) build_oob_forest backwards compatiblility with sklearn and ii) HonestForest stratification during bootstrap by @adam2392 in https://github.com/neurodata/scikit-tree/pull/283

Full Changelog: https://github.com/neurodata/scikit-tree/compare/v0.7.0...v0.8.0

- Jupyter Notebook
Published by adam2392 over 1 year ago

treeple - v0.7.0

What's Changed

  • Bump actions/setup-python from 4 to 5 by @dependabot in https://github.com/neurodata/scikit-tree/pull/189
  • Bump actions/upload-artifact from 3 to 4 by @dependabot in https://github.com/neurodata/scikit-tree/pull/190
  • Bump actions/download-artifact from 3 to 4 by @dependabot in https://github.com/neurodata/scikit-tree/pull/191
  • ENH add MI simulations by @PSSF23 in https://github.com/neurodata/scikit-tree/pull/199
  • [ENH] Efficient out-of-bag computation per honest tree by @adam2392 in https://github.com/neurodata/scikit-tree/pull/200
  • Bump actions/cache from 3 to 4 by @dependabot in https://github.com/neurodata/scikit-tree/pull/202
  • Bump pypa/cibuildwheel from 2.16.2 to 2.16.4 by @dependabot in https://github.com/neurodata/scikit-tree/pull/205
  • [ENH] Allow HonestForest to sample higher than max_samples # of bootstraps by @adam2392 in https://github.com/neurodata/scikit-tree/pull/206
  • [RELEASE] v0.6.0 by @adam2392 in https://github.com/neurodata/scikit-tree/pull/207
  • [ENH] Allow max sample without bootstrap in HonestForestClassifier by @adam2392 in https://github.com/neurodata/scikit-tree/pull/210
  • [ENH] A modular approach to constructing forests that have permuted covariates by @adam2392 in https://github.com/neurodata/scikit-tree/pull/211
  • Bump codecov/codecov-action from 3 to 4 by @dependabot in https://github.com/neurodata/scikit-tree/pull/214
  • ENH: add code for marron wand simulator by @sampan501 in https://github.com/neurodata/scikit-tree/pull/203
  • FIX correct the statistic names for S@98 by @PSSF23 in https://github.com/neurodata/scikit-tree/pull/217
  • [DOC] Link to quantile-forests in quantile regression examples by @adam2392 in https://github.com/neurodata/scikit-tree/pull/220
  • change noise from uniform to gaussian by @sampan501 in https://github.com/neurodata/scikit-tree/pull/223
  • [ENH] Getting pvalue computation ready by @adam2392 in https://github.com/neurodata/scikit-tree/pull/222
  • [API] Fix HonestTreeClassifier and HonestForestClassifier to override all arguments passed to the underlying tree_estimator by @adam2392 in https://github.com/neurodata/scikit-tree/pull/228
  • MAINT, API Change trunk-classification into three separate functions for generating trunk, trunk-mix, trunk-overlap and marron-wand by @adam2392 in https://github.com/neurodata/scikit-tree/pull/227
  • MAINT honest API with a multi view by @adam2392 in https://github.com/neurodata/scikit-tree/pull/231

Full Changelog: https://github.com/neurodata/scikit-tree/compare/v0.5...v0.7.0

- Jupyter Notebook
Published by adam2392 about 2 years ago

treeple - v0.6.1

What's Changed

  • [RELEASE] v0.6.0 by @adam2392 in https://github.com/neurodata/scikit-tree/pull/207
  • [ENH] Allow max sample without bootstrap in HonestForestClassifier by @adam2392 in https://github.com/neurodata/scikit-tree/pull/210. This also removes a bug where max_samples is checked for an error.

Full Changelog: https://github.com/neurodata/scikit-tree/compare/v0.6...v0.6.1

- Jupyter Notebook
Published by adam2392 about 2 years ago

treeple - v0.6

What's Changed

  • Bump actions/setup-python from 4 to 5 by @dependabot in https://github.com/neurodata/scikit-tree/pull/189
  • Bump actions/upload-artifact from 3 to 4 by @dependabot in https://github.com/neurodata/scikit-tree/pull/190
  • Bump actions/download-artifact from 3 to 4 by @dependabot in https://github.com/neurodata/scikit-tree/pull/191
  • ENH add MI simulations by @PSSF23 in https://github.com/neurodata/scikit-tree/pull/199
  • [ENH] Efficient out-of-bag computation per honest tree by @adam2392 in https://github.com/neurodata/scikit-tree/pull/200
  • Bump actions/cache from 3 to 4 by @dependabot in https://github.com/neurodata/scikit-tree/pull/202
  • Bump pypa/cibuildwheel from 2.16.2 to 2.16.4 by @dependabot in https://github.com/neurodata/scikit-tree/pull/205
  • [ENH] Allow HonestForest to sample higher than max_samples # of bootstraps by @adam2392 in https://github.com/neurodata/scikit-tree/pull/206

Full Changelog: https://github.com/neurodata/scikit-tree/compare/v0.5...v0.6

- Jupyter Notebook
Published by adam2392 about 2 years ago

treeple - v0.5

What's Changed

  • [RELEASE] Add v0.4.x by @adam2392 in https://github.com/neurodata/scikit-tree/pull/173
  • Start new dev v0.5.0dev0 by @adam2392 in https://github.com/neurodata/scikit-tree/pull/174
  • [DOC] Adding notebooks for might/comight cancer by @adam2392 in https://github.com/neurodata/scikit-tree/pull/172
  • [ENH] Add bug-fix for multi view splitter and updates submodule by @adam2392 in https://github.com/neurodata/scikit-tree/pull/183
  • [RELEASE] v0.5 release by @adam2392 in https://github.com/neurodata/scikit-tree/pull/186

Full Changelog: https://github.com/neurodata/scikit-tree/compare/v0.4...v0.5

- Jupyter Notebook
Published by adam2392 about 2 years ago

treeple - v0.4

What's Changed

  • ENH add multi-view example by @PSSF23 in https://github.com/neurodata/scikit-tree/pull/154
  • [DEV] Fixing the versions to now start v0.4.dev0 by @adam2392 in https://github.com/neurodata/scikit-tree/pull/160
  • FIX improve performance by updating max_features by @PSSF23 in https://github.com/neurodata/scikit-tree/pull/161
  • [FIX] issue#165 bug-fix by @SUKI-O in https://github.com/neurodata/scikit-tree/pull/166
  • [ENH] Add option to permute per forest fraction by @adam2392 in https://github.com/neurodata/scikit-tree/pull/145
  • [ENH] Add dataset generators by @adam2392 in https://github.com/neurodata/scikit-tree/pull/169
  • [ENH, BUG] Test honest tree performance via quadratic simulation by @adam2392 in https://github.com/neurodata/scikit-tree/pull/164
  • [ENH] Add conditional resampling using nearest-neighbor algorithm by @adam2392 in https://github.com/neurodata/scikit-tree/pull/170
  • [ENH] Allow sampling feature sets separately in MultiViewDTC by @adam2392 in https://github.com/neurodata/scikit-tree/pull/152
  • [MINOR RELEASE] v0.4.1 by @adam2392 in https://github.com/neurodata/scikit-tree/pull/180

Full Changelog: https://github.com/neurodata/scikit-tree/compare/v0.3...v0.4

- Jupyter Notebook
Published by adam2392 about 2 years ago

treeple - v0.3

What's Changed

  • [MAINT] Begin v0.3.0dev0 by @adam2392 in https://github.com/neurodata/scikit-tree/pull/134
  • [ENH, BUG] Consistency of train/test samples in forest HT by @adam2392 in https://github.com/neurodata/scikit-tree/pull/135
  • ENH add pAUC example script for doc render by @PSSF23 in https://github.com/neurodata/scikit-tree/pull/136
  • [MAINT] Adding v0.2.x branch by @adam2392 in https://github.com/neurodata/scikit-tree/pull/137
  • Fix for MIGHT p-value shuffling all columns by default by @sampan501 in https://github.com/neurodata/scikit-tree/pull/140
  • DOC update format by @PSSF23 in https://github.com/neurodata/scikit-tree/pull/139
  • Bump pypa/cibuildwheel from 2.16.1 to 2.16.2 by @dependabot in https://github.com/neurodata/scikit-tree/pull/138
  • [ENH] Cython axis-aligned multi-view splitter by @adam2392 in https://github.com/neurodata/scikit-tree/pull/129
  • [MAINT] Update Ctypes in line with scikit-learn: main by @adam2392 in https://github.com/neurodata/scikit-tree/pull/141
  • [DOC] Example of Multiview MIGHT and Forest by @adam2392 in https://github.com/neurodata/scikit-tree/pull/142
  • FIX add max_fpr argument to auc example by @PSSF23 in https://github.com/neurodata/scikit-tree/pull/149
  • [DOC] Adding citation file by @adam2392 in https://github.com/neurodata/scikit-tree/pull/144
  • [DOC] Adding development docs to make sure it is clear how to do dev by @adam2392 in https://github.com/neurodata/scikit-tree/pull/150
  • Stratify sampling when split train/test data by @YuxinB in https://github.com/neurodata/scikit-tree/pull/143
  • [DOC] Add Quantile forest examples by @SUKI-O in https://github.com/neurodata/scikit-tree/pull/147
  • Adding fix to honest forest feature importances by @adam2392 in https://github.com/neurodata/scikit-tree/pull/156
  • [FIX] Adding fix to allow any kind of tree for honesttree by @adam2392 in https://github.com/neurodata/scikit-tree/pull/158
  • [RELEASE] V0.3.x by @adam2392 in https://github.com/neurodata/scikit-tree/pull/159

New Contributors

  • @YuxinB made their first contribution in https://github.com/neurodata/scikit-tree/pull/143

Full Changelog: https://github.com/neurodata/scikit-tree/compare/v0.2.0...v0.3

- Jupyter Notebook
Published by adam2392 over 2 years ago

treeple - v0.2.1

BUG fix in random sampling of forestHT estimators.

What's Changed

  • [ENH, BUG] Consistency of train/test samples in forest HT by @adam2392 in https://github.com/neurodata/scikit-tree/pull/135
  • ENH add pAUC example script for doc render by @PSSF23 in https://github.com/neurodata/scikit-tree/pull/136

Full Changelog: https://github.com/neurodata/scikit-tree/compare/v0.2.0...v0.2.1

- Jupyter Notebook
Published by adam2392 over 2 years ago

treeple - v0.2.0

What's Changed

  • New version v0.2.0dev0 by @adam2392 in https://github.com/neurodata/scikit-tree/pull/97
  • Bump pypa/cibuildwheel from 2.13.1 to 2.14.0 by @dependabot in https://github.com/neurodata/scikit-tree/pull/100
  • DOC update document references & include summary for papers at home page by @PSSF23 in https://github.com/neurodata/scikit-tree/pull/104
  • [ENH] Fix failing unit tests by @adam2392 in https://github.com/neurodata/scikit-tree/pull/109
  • Bump pypa/cibuildwheel from 2.14.0 to 2.15.0 by @dependabot in https://github.com/neurodata/scikit-tree/pull/108
  • [ENH] Optimize Unsuprf by @adam2392 in https://github.com/neurodata/scikit-tree/pull/114
  • [ENH] Even faster unsupervised forests and trees by @adam2392 in https://github.com/neurodata/scikit-tree/pull/117
  • Bump actions/checkout from 3 to 4 by @dependabot in https://github.com/neurodata/scikit-tree/pull/122
  • FIX remove unnecessary notebook by @PSSF23 in https://github.com/neurodata/scikit-tree/pull/123
  • [ENH] Add asv benchmarking files and benchmarking scripts by @adam2392 in https://github.com/neurodata/scikit-tree/pull/124
  • [ENH] Add "extratrees" for oblique trees #46 by @SUKI-O in https://github.com/neurodata/scikit-tree/pull/75
  • [ENH] Extended isolation forest by @adam2392 in https://github.com/neurodata/scikit-tree/pull/101
  • ENH add StreamDecisionForest class for streaming trees by @PSSF23 in https://github.com/neurodata/scikit-tree/pull/116
  • Bump pypa/cibuildwheel from 2.15.0 to 2.16.0 by @dependabot in https://github.com/neurodata/scikit-tree/pull/127
  • [ENH] add PermutationForests and FeatureImportanceForests to sktree by @PSSF23 in https://github.com/neurodata/scikit-tree/pull/125

Full Changelog: https://github.com/neurodata/scikit-tree/compare/v0.1.3...v0.2.0

- Jupyter Notebook
Published by adam2392 over 2 years ago

treeple - v0.1.3

Initial release of scikit-tree.

- Jupyter Notebook
Published by adam2392 over 2 years ago