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sdcflows

Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes

https://github.com/nipreps/sdcflows

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
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    Academic email domains
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    Institutional organization owner
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    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (8.3%) to scientific vocabulary

Keywords

echo-planar-imaging image-artifacts magnetic-resonance-imaging nonlinear-distortions
Last synced: 10 months ago · JSON representation

Repository

Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes

Basic Info
Statistics
  • Stars: 43
  • Watchers: 10
  • Forks: 28
  • Open Issues: 38
  • Releases: 67
Topics
echo-planar-imaging image-artifacts magnetic-resonance-imaging nonlinear-distortions
Created about 7 years ago · Last pushed 10 months ago
Metadata Files
Readme Changelog Contributing License Zenodo

README.rst 

SDCFlows
--------
.. image:: https://img.shields.io/pypi/v/sdcflows.svg
  :target: https://pypi.python.org/pypi/sdcflows/
  :alt: Latest Version

.. image:: https://codecov.io/gh/nipreps/sdcflows/branch/master/graph/badge.svg?token=V2CS5adHYk
  :target: https://codecov.io/gh/nipreps/sdcflows

.. image:: https://circleci.com/gh/nipreps/sdcflows.svg?style=svg
    :target: https://circleci.com/gh/nipreps/sdcflows

.. image:: https://github.com/nipreps/sdcflows/workflows/Deps%20&%20CI/badge.svg
    :target: https://github.com/nipreps/sdcflows/actions

SDCFlows (*Susceptibility Distortion Correction workFlows*) is a Python library of
*NiPype*-based workflows to preprocess *B0* mapping data, estimate the corresponding
fieldmap and finally correct for susceptibility distortions.
Susceptibility-derived distortions are typically displayed by images acquired with EPI
(echo-planar imaging) MR schemes.

The library is designed to provide an easily accessible, state-of-the-art interface that is
robust to differences in scan acquisition protocols and that requires minimal user input.

This open-source neuroimaging data processing tool is being developed as a part of
the MRI image analysis and reproducibility platform offered by
`NiPreps `__.

Owner

  • Name: NeuroImaging PREProcessing toolS
  • Login: nipreps
  • Kind: organization
  • Email: nipreps@gmail.com

GitHub Events

Total
  • Create event: 23
  • Release event: 5
  • Issues event: 6
  • Watch event: 12
  • Delete event: 15
  • Issue comment event: 59
  • Push event: 72
  • Pull request event: 47
  • Pull request review event: 46
  • Pull request review comment event: 26
  • Fork event: 4
Last Year
  • Create event: 23
  • Release event: 5
  • Issues event: 6
  • Watch event: 12
  • Delete event: 15
  • Issue comment event: 59
  • Push event: 72
  • Pull request event: 47
  • Pull request review event: 46
  • Pull request review comment event: 26
  • Fork event: 4

Issues and Pull Requests

Last synced: 10 months ago

All Time
  • Total issues: 46
  • Total pull requests: 108
  • Average time to close issues: 9 months
  • Average time to close pull requests: 23 days
  • Total issue authors: 15
  • Total pull request authors: 15
  • Average comments per issue: 3.15
  • Average comments per pull request: 2.02
  • Merged pull requests: 80
  • Bot issues: 0
  • Bot pull requests: 12
Past Year
  • Issues: 6
  • Pull requests: 29
  • Average time to close issues: about 1 month
  • Average time to close pull requests: 12 days
  • Issue authors: 6
  • Pull request authors: 9
  • Average comments per issue: 1.83
  • Average comments per pull request: 1.24
  • Merged pull requests: 21
  • Bot issues: 0
  • Bot pull requests: 4
View more stats
Top Authors
Issue Authors
  • effigies (13)
  • oesteban (10)
  • tsalo (3)
  • psadil (3)
  • bpinsard (2)
  • mgxd (2)
  • SRSteinkamp (1)
  • sjshim (1)
  • manzouri (1)
  • davidrs06 (1)
  • dwong263 (1)
  • jmatthews-rotman (1)
  • miltoncamacho (1)
  • KirkGraff (1)
  • mitchellxh (1)
Pull Request Authors
  • effigies (62)
  • oesteban (22)
  • dependabot[bot] (17)
  • tsalo (7)
  • mathdugre (4)
  • marcelzwiers (4)
  • mgxd (4)
  • psadil (4)
  • bpinsard (3)
  • jhlegarreta (3)
  • lalalavi (2)
  • HippocampusGirl (2)
  • miltoncamacho (2)
  • jmarabotto (2)
  • smeisler (2)
Top Labels
Issue Labels
bug (24) enhancement (8) impact: low (3) T1w-SyN (2) effort: high (2) effort: low (2) Gathering feedback (1) documentation (1) impact: medium (1) GRE - phasediff (1) good first issue (1) reports (1)
Pull Request Labels
dependencies (17) github_actions (3) backport (1) python (1)

Packages

  • Total packages: 1
  • Total downloads:
    • pypi 5,293 last-month
  • Total docker downloads: 90
  • Total dependent packages: 4
  • Total dependent repositories: 9
  • Total versions: 69
  • Total maintainers: 4
pypi.org: sdcflows

Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes.

  • Versions: 69
  • Dependent Packages: 4
  • Dependent Repositories: 9
  • Downloads: 5,293 Last month
  • Docker Downloads: 90
Rankings
Docker downloads count: 1.2%
Dependent packages count: 2.4%
Downloads: 2.8%
Average: 2.8%
Dependent repos count: 4.9%
Maintainers (4)
cjmarkie mgxd oesteban nipreps
Last synced: 10 months ago

Dependencies

docs/requirements.txt pypi
  • attrs >=20.1.0
  • furo *
  • matplotlib >=2.2.0
  • nibabel *
  • nipype >=1.5.1
  • niworkflows *
  • numpy *
  • packaging *
  • pydot >=1.2.3
  • pydotplus *
  • sphinx *
  • sphinxcontrib-apidoc *
  • sphinxcontrib-napoleon *
  • templateflow *
  • traits <6.4
min-requirements.txt pypi
  • attrs ==20.1.0
  • nibabel ==3.0.1
  • nipype ==1.5.1
  • nitransforms ==21.0.0
  • niworkflows ==1.4.2
  • numpy ==1.21.0
  • pybids ==0.12.1
  • scikit-image ==0.18
  • scipy ==1.6.0
  • templateflow ==0.6
requirements.txt pypi
  • attrs >=20.1.0
  • nibabel >=3.0.1
  • nipype <2.0,>=1.5.1
  • nitransforms >=21.0.0
  • niworkflows <1.6,>=1.4.2
  • numpy >=1.21.0
  • pybids >=0.12.1
  • scikit-image >=0.18
  • scipy >=1.6.0
  • templateflow >=0.6
.github/workflows/docs-build-pr.yml actions
  • actions/checkout v3 composite
.github/workflows/docs-build-update.yml actions
  • actions/checkout v3 composite
.github/workflows/pythonpackage.yml actions
  • actions/cache v3 composite
  • actions/checkout v3 composite
  • actions/setup-python v4 composite
.github/workflows/unittests.yml actions
  • actions/cache v3 composite
  • actions/checkout v3 composite
  • conda-incubator/setup-miniconda v2 composite
Dockerfile docker
  • ubuntu focal-20210416 build
pyproject.toml pypi
setup.py pypi