bambu-nf - bambu-nf 1.1.1

1.1.1 - [2025-07-28]

Bug fix for filtering for detected transcripts for single samples

- Nextflow
Published by apsteinberg 12 months ago

bambu-nf - bambu-nf 1.1.0

1.1.0 - [2025-07-27]

Updates to perform QC post-filtering; make filtering the default pre-assembly

Added

• Perform QC with nanostats post-filtering
• filter reads pre-assembly as default behavior
• quant only mode
• merge only mode

- Nextflow
Published by apsteinberg 12 months ago

bambu-nf - bambu-nf 1.0.0

Initial release of shahcompbio/bambu-nf, created with the nf-core template.

Added

• Transcript assembly & quant with bambu
• Flags to pre-filter reads before assembly on read length & mapq (useful for samples with inadequate QC)
• Flags to pre-filter reads on accessory chromosomes (can sometimes cause issues for Bambu)
• Flag to adjust NDR in bambu

- Nextflow
Published by apsteinberg about 1 year ago