partseg

Tool for segmentation in bioimaging

https://github.com/4dnucleome/partseg

Science Score: 77.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
    Found CITATION.cff file
  • codemeta.json file
    Found codemeta.json file
  • .zenodo.json file
    Found .zenodo.json file
  • DOI references
    Found 6 DOI reference(s) in README
  • Academic publication links
    Links to: zenodo.org
  • Committers with academic emails
    4 of 17 committers (23.5%) from academic institutions
  • Institutional organization owner
  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (13.2%) to scientific vocabulary

Keywords

bioimage-analysis napari

Keywords from Contributors

hydrology mesh standards parallel yolov5s optimizer data-profiling energy-systems medical-imaging interpretability
Last synced: 6 months ago · JSON representation ·

Repository

Tool for segmentation in bioimaging

Basic Info
  • Host: GitHub
  • Owner: 4DNucleome
  • License: bsd-3-clause
  • Language: Python
  • Default Branch: develop
  • Homepage: https://partseg.github.io/
  • Size: 32.9 MB
Statistics
  • Stars: 35
  • Watchers: 3
  • Forks: 11
  • Open Issues: 22
  • Releases: 87
Topics
bioimage-analysis napari
Created about 7 years ago · Last pushed 6 months ago
Metadata Files
Readme Changelog License Citation Zenodo

Readme.md

PartSeg

Contributions Tests PyPI version Anaconda version Python Version Documentation Status Azure Pipelines Build Status DOI Publication DOI Licence: BSD3 pre-commit Code Style Ruff CodeQL Codacy Badge codecov DeepSource

PartSeg is a GUI and a library for segmentation algorithms. PartSeg also provide napari plugins for IO and labels measurement.

This application is designed to help biologist with segmentation based on threshold and connected components.

interface

Tutorials

  • Tutorial: Chromosome 1 (as gui) link
  • Data for chromosome 1 tutorial link
  • Tutorial: Different neuron types (as library) link

Installation

  • From binaries:

    • Windows (build on Windows 10)
    • Linux (build on Ubuntu 20.04)
    • macOS (build on macOS 13)
    • macOS arm (build on macOS 14) There are reported problems with permissions systems on macOS. If you have a problem with starting the application, please try to run it from the terminal.
  • With pip:

    • From pypi: pip install PartSeg[all]
    • From repository: pip install git+https://github.com/4DNucleome/PartSeg.git
  • With conda:

    • conda install -c conda-forge partseg
    • mamba install -c conda-forge partseg - As mamba is faster than conda
  • With napari:

If you do not know how to setup python environment on your system you may use napari to run PartSeg. It is a GUI for scientific image analysis. PartSeg is also a plugin for napari so could be installed from plugin dialog. To install napari bundle please download it napari bundle and follow installation instructions.

Installation troubleshooting information could be found in wiki: wiki. If this information does not solve problem you can open issue.

Qt 6 support

PartSeg development branch support (and stable since 0.15.0) has experimental Qt6 support. Test are passing but not whole GUI code is covered by tests. Inf you Find any problem please report it.

Running

If you downloaded binaries, run the PartSeg (or PartSeg.exe for Windows) file inside the PartSeg folder

If you installed from repository or from pip, you can run it with PartSeg command or python -m PartSeg. First option does not work on Windows.

PartSeg export few commandline options:

  • --no_report - disable error reporting
  • --no_dialog - disable error reporting and error dialog. Use only when running from terminal.
  • roi - skip launcher and start ROI analysis gui
  • mask- skip launcher and start ROI mask gui

napari plugin

PartSeg provides napari plugins for io to allow reading projects format in napari viewer.

Save Format

Saved projects are tar files compressed with gzip or bz2.

Metadata is saved in data.json file (in json format). Images/masks are saved as *.npy (numpy array format).

Interface

Launcher. Choose the program that you will launch:

launcher

Main window of Segmentation Analysis:

interface

Main window of Segmentation Analysis with view on measurement result:

interface

Window for creating a set of measurements:

statistics

Main window of Mask Segmentation:

mask interface

Laboratory

Laboratory of Functional and Structural Genomics http://4dnucleome.cent.uw.edu.pl/

Cite as

Bokota, G., Sroka, J., Basu, S. et al. PartSeg: a tool for quantitative feature extraction from 3D microscopy images for dummies. BMC Bioinformatics 22, 72 (2021). https://doi.org/10.1186/s12859-021-03984-1

Owner

  • Name: 4DNucleome
  • Login: 4DNucleome
  • Kind: organization

Citation (CITATION.cff)

# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!

cff-version: 1.2.0
title: >-
  PartSeg: a tool for quantitative feature extraction
  from 3D microscopy images for dummies
message: Cite as
type: software
authors:
  - given-names: Grzegorz
    family-names: Bokota
    email: g.bokota@mimuw.edu.pl
    orcid: 'https://orcid.org/0000-0002-5470-1676'
  - given-names: Jacek
    family-names: Sroka
    orcid: 'https://orcid.org/0000-0002-1714-9667'
  - orcid: 'https://orcid.org/0000-0003-1780-0461'
    given-names: Subhadip
    family-names: Basu
  - given-names: Nirmal
    family-names: Das
  - given-names: Paweł
    family-names: Trzaskoma
    orcid: 'https://orcid.org/0000-0002-5823-6572'
  - given-names: Yana
    family-names: Yushkevich
    orcid: 'https://orcid.org/0000-0002-5475-8613'
  - given-names: Agnieszka
    family-names: Grabowska
    orcid: 'https://orcid.org/0000-0002-8804-6817'
  - given-names: Adriana
    family-names: Magalska
    orcid: 'https://orcid.org/0000-0002-0517-7134'
  - given-names: Dariusz
    family-names: Plewczyński
    orcid: 'https://orcid.org/0000-0002-3840-7610'
doi: doi.org/10.1186/s12859-021-03984-1

GitHub Events

Total
  • Create event: 71
  • Release event: 4
  • Issues event: 18
  • Watch event: 7
  • Delete event: 63
  • Issue comment event: 406
  • Push event: 225
  • Pull request review comment event: 39
  • Pull request review event: 106
  • Pull request event: 128
  • Fork event: 1
Last Year
  • Create event: 71
  • Release event: 4
  • Issues event: 18
  • Watch event: 7
  • Delete event: 63
  • Issue comment event: 406
  • Push event: 225
  • Pull request review comment event: 39
  • Pull request review event: 106
  • Pull request event: 128
  • Fork event: 1

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 1,910
  • Total Committers: 17
  • Avg Commits per committer: 112.353
  • Development Distribution Score (DDS): 0.362
Past Year
  • Commits: 174
  • Committers: 5
  • Avg Commits per committer: 34.8
  • Development Distribution Score (DDS): 0.213
Top Committers
Name Email Commits
Grzegorz Bokota b****b@g****m 1,219
Grzegorz Bokota g****a@c****l 348
Grzegorz Bokota b****a@g****m 173
pre-commit-ci[bot] 6****] 86
dependabot[bot] 4****] 57
Grzegorz Bokota g****a@m****l 10
sroka s****a@m****l 4
dependabot-preview[bot] 2****] 4
semgrep.dev on behalf of @Czaki s****t@r****v 1
sourcery-ai[bot] 5****] 1
github-actions[bot] 4****] 1
Justin Kiggins j****s@g****m 1
Anodarai 5****i 1
DeepSource Bot b****t@d****o 1
Clemens Hug c****g@h****u 1
deepsource-autofix[bot] 6****] 1
jaimergp j****p 1
Committer Domains (Top 20 + Academic)

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 45
  • Total pull requests: 373
  • Average time to close issues: 24 days
  • Average time to close pull requests: 6 days
  • Total issue authors: 4
  • Total pull request authors: 6
  • Average comments per issue: 0.16
  • Average comments per pull request: 2.85
  • Merged pull requests: 315
  • Bot issues: 41
  • Bot pull requests: 127
Past Year
  • Issues: 7
  • Pull requests: 56
  • Average time to close issues: about 1 month
  • Average time to close pull requests: 5 days
  • Issue authors: 2
  • Pull request authors: 4
  • Average comments per issue: 0.71
  • Average comments per pull request: 2.43
  • Merged pull requests: 38
  • Bot issues: 6
  • Bot pull requests: 29
Top Authors
Issue Authors
  • github-actions[bot] (45)
  • Czaki (6)
  • sentry-io[bot] (1)
  • iyasik (1)
Pull Request Authors
  • Czaki (328)
  • pre-commit-ci[bot] (86)
  • dependabot[bot] (45)
  • github-actions[bot] (9)
  • sourcery-ai[bot] (6)
  • jaimergp (1)
  • daviddaytw (1)
Top Labels
Issue Labels
bug (45) skip check PR title (1)
Pull Request Labels
skip check PR title (55) dependencies (45) python (23) github_actions (18) enhancement (2) bugfix (1)

Packages

  • Total packages: 4
  • Total downloads:
    • pypi 912 last-month
  • Total dependent packages: 2
    (may contain duplicates)
  • Total dependent repositories: 1
    (may contain duplicates)
  • Total versions: 230
  • Total maintainers: 1
proxy.golang.org: github.com/4dnucleome/partseg
  • Versions: 66
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent packages count: 9.0%
Average: 9.6%
Dependent repos count: 10.2%
Last synced: 6 months ago
proxy.golang.org: github.com/4DNucleome/PartSeg
  • Versions: 66
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent packages count: 9.0%
Average: 9.6%
Dependent repos count: 10.2%
Last synced: 6 months ago
pypi.org: partseg

PartSeg is python GUI and set of napari plugins for bio imaging analysis especially nucleus analysis,

  • Versions: 91
  • Dependent Packages: 1
  • Dependent Repositories: 1
  • Downloads: 912 Last month
Rankings
Dependent packages count: 4.7%
Downloads: 7.3%
Average: 11.6%
Forks count: 11.9%
Stargazers count: 12.0%
Dependent repos count: 21.7%
Maintainers (1)
Last synced: 6 months ago
conda-forge.org: partseg
  • Versions: 7
  • Dependent Packages: 1
  • Dependent Repositories: 0
Rankings
Dependent packages count: 28.8%
Dependent repos count: 34.0%
Average: 38.9%
Stargazers count: 44.9%
Forks count: 47.7%
Last synced: 6 months ago

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  • jsonschema-specifications ==2023.12.1
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  • kiwisolver ==1.4.5
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  • partsegcore-compiled-backend ==0.15.6
  • partsegdata ==0.10.0
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  • pyconify ==0.1.6
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  • pydantic-compat ==0.1.2
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  • pyqt5-qt5 ==5.15.2
  • pyqt5-sip ==12.13.0
  • pyqt6 ==6.6.1
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  • pyqt6-sip ==13.6.0
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  • rich ==13.7.1
  • rpds-py ==0.18.0
  • scikit-image ==0.22.0
  • scipy ==1.12.0
  • sentry-sdk ==1.40.6
  • setuptools ==69.1.1
  • shiboken2 ==5.13.2
  • shiboken6 ==6.6.2
  • simpleitk ==2.3.1
  • six ==1.16.0
  • snowballstemmer ==2.2.0
  • sphinx ==7.2.6
  • sphinxcontrib-applehelp ==1.0.8
  • sphinxcontrib-devhelp ==1.0.6
  • sphinxcontrib-htmlhelp ==2.0.5
  • sphinxcontrib-jsmath ==1.0.1
  • sphinxcontrib-qthelp ==1.0.7
  • sphinxcontrib-serializinghtml ==1.1.10
  • stack-data ==0.6.3
  • superqt ==0.6.1
  • sympy ==1.12
  • tabulate ==0.9.0
  • tifffile ==2024.2.12
  • tomli-w ==1.0.0
  • toolz ==0.12.1
  • tornado ==6.4
  • tqdm ==4.66.2
  • traceback-with-variables ==2.0.4
  • traitlets ==5.14.1
  • typer ==0.9.0
  • typing-extensions ==4.10.0
  • tzdata ==2024.1
  • urllib3 ==2.2.1
  • vispy ==0.14.1
  • wcwidth ==0.2.13
  • wrapt ==1.16.0
  • xlrd ==2.0.1
  • xlsxwriter ==3.2.0
  • zipp ==3.17.0
requirements/constraints_py3.11_docs.txt pypi
  • alabaster ==0.7.16
  • app-model ==0.2.4
  • appdirs ==1.4.4
  • asttokens ==2.4.1
  • attrs ==23.2.0
  • autodoc-pydantic ==1.9.0
  • babel ==2.14.0
  • build ==1.0.3
  • cachey ==0.2.1
  • certifi ==2024.2.2
  • charset-normalizer ==3.3.2
  • click ==8.1.7
  • cloudpickle ==3.0.0
  • comm ==0.2.1
  • czifile ==2019.7.2
  • dask ==2024.2.1
  • debugpy ==1.8.1
  • decorator ==5.1.1
  • defusedxml ==0.7.1
  • docstring-parser ==0.15
  • docutils ==0.20.1
  • et-xmlfile ==1.1.0
  • executing ==2.0.1
  • fonticon-fontawesome6 ==6.4.0
  • freetype-py ==2.4.0
  • fsspec ==2024.2.0
  • h5py ==3.10.0
  • heapdict ==1.0.1
  • hsluv ==5.0.4
  • idna ==3.6
  • imagecodecs ==2024.1.1
  • imageio ==2.34.0
  • imagesize ==1.4.1
  • importlib-metadata ==7.0.1
  • in-n-out ==0.1.9
  • ipykernel ==6.29.3
  • ipython ==8.22.1
  • jedi ==0.19.1
  • jinja2 ==3.1.3
  • jsonschema ==4.21.1
  • jsonschema-specifications ==2023.12.1
  • jupyter-client ==8.6.0
  • jupyter-core ==5.7.1
  • kiwisolver ==1.4.5
  • lazy-loader ==0.3
  • local-migrator ==0.1.10
  • locket ==1.0.0
  • magicgui ==0.8.1
  • mahotas ==1.4.13
  • markdown-it-py ==3.0.0
  • markupsafe ==2.1.5
  • matplotlib-inline ==0.1.6
  • mdurl ==0.1.2
  • mpmath ==1.3.0
  • mypy-extensions ==1.0.0
  • napari ==0.4.19.post1
  • napari-console ==0.0.9
  • napari-plugin-engine ==0.2.0
  • napari-svg ==0.1.10
  • nest-asyncio ==1.6.0
  • networkx ==3.2.1
  • nme ==0.1.8
  • npe2 ==0.7.4
  • numpy ==1.26.4
  • numpydoc ==1.6.0
  • oiffile ==2023.8.30
  • openpyxl ==3.1.2
  • packaging ==23.2
  • pandas ==2.2.1
  • parso ==0.8.3
  • partd ==1.4.1
  • partsegcore-compiled-backend ==0.15.6
  • partsegdata ==0.10.0
  • pexpect ==4.9.0
  • pillow ==10.2.0
  • pint ==0.23
  • platformdirs ==4.2.0
  • pooch ==1.8.1
  • prompt-toolkit ==3.0.43
  • psutil ==5.9.8
  • psygnal ==0.9.5
  • ptyprocess ==0.7.0
  • pure-eval ==0.2.2
  • pyconify ==0.1.6
  • pydantic ==1.10.14
  • pydantic-compat ==0.1.2
  • pygments ==2.17.2
  • pyopengl ==3.1.7
  • pyproject-hooks ==1.0.0
  • pyqt5 ==5.15.10
  • pyqt5-qt5 ==5.15.2
  • pyqt5-sip ==12.13.0
  • pyqt6 ==6.6.1
  • pyqt6-qt6 ==6.6.2
  • pyqt6-sip ==13.6.0
  • pyside2 ==5.13.2
  • pyside6 ==6.6.2
  • pyside6-addons ==6.6.2
  • pyside6-essentials ==6.6.2
  • python-dateutil ==2.8.2
  • pytz ==2024.1
  • pyyaml ==6.0.1
  • pyzmq ==25.1.2
  • qtawesome ==1.3.0
  • qtconsole ==5.5.1
  • qtpy ==2.4.1
  • referencing ==0.33.0
  • requests ==2.31.0
  • rich ==13.7.1
  • rpds-py ==0.18.0
  • scikit-image ==0.22.0
  • scipy ==1.12.0
  • sentry-sdk ==1.40.6
  • shiboken2 ==5.13.2
  • shiboken6 ==6.6.2
  • simpleitk ==2.3.1
  • six ==1.16.0
  • snowballstemmer ==2.2.0
  • sphinx ==7.2.6
  • sphinx-autodoc-typehints ==2.0.0
  • sphinx-qt-documentation ==0.4.1
  • sphinxcontrib-applehelp ==1.0.8
  • sphinxcontrib-devhelp ==1.0.6
  • sphinxcontrib-htmlhelp ==2.0.5
  • sphinxcontrib-jsmath ==1.0.1
  • sphinxcontrib-qthelp ==1.0.7
  • sphinxcontrib-serializinghtml ==1.1.10
  • stack-data ==0.6.3
  • superqt ==0.6.1
  • sympy ==1.12
  • tabulate ==0.9.0
  • tifffile ==2024.2.12
  • tomli-w ==1.0.0
  • toolz ==0.12.1
  • tornado ==6.4
  • tqdm ==4.66.2
  • traceback-with-variables ==2.0.4
  • traitlets ==5.14.1
  • typer ==0.9.0
  • typing-extensions ==4.10.0
  • tzdata ==2024.1
  • urllib3 ==2.2.1
  • vispy ==0.14.1
  • wcwidth ==0.2.13
  • wrapt ==1.16.0
  • xlrd ==2.0.1
  • xlsxwriter ==3.2.0
  • zipp ==3.17.0
requirements/constraints_py3.8.txt pypi
  • alabaster ==0.7.13
  • altgraph ==0.17.4
  • app-model ==0.2.4
  • appdirs ==1.4.4
  • asttokens ==2.4.1
  • attrs ==23.2.0
  • babel ==2.14.0
  • backcall ==0.2.0
  • build ==1.0.3
  • cachey ==0.2.1
  • certifi ==2024.2.2
  • charset-normalizer ==3.3.2
  • click ==8.1.7
  • cloudpickle ==3.0.0
  • comm ==0.2.1
  • coverage ==7.4.3
  • czifile ==2019.7.2
  • dask ==2023.5.0
  • debugpy ==1.8.1
  • decorator ==5.1.1
  • defusedxml ==0.7.1
  • docstring-parser ==0.15
  • docutils ==0.20.1
  • et-xmlfile ==1.1.0
  • exceptiongroup ==1.2.0
  • executing ==2.0.1
  • fonticon-fontawesome6 ==6.4.0
  • freetype-py ==2.4.0
  • fsspec ==2024.2.0
  • h5py ==3.10.0
  • heapdict ==1.0.1
  • hsluv ==5.0.4
  • idna ==3.6
  • imagecodecs ==2023.3.16
  • imageio ==2.34.0
  • imagesize ==1.4.1
  • importlib-metadata ==7.0.1
  • importlib-resources ==6.1.2
  • in-n-out ==0.1.9
  • iniconfig ==2.0.0
  • ipykernel ==6.29.3
  • ipython ==8.12.3
  • jedi ==0.19.1
  • jinja2 ==3.1.3
  • jsonschema ==4.21.1
  • jsonschema-specifications ==2023.12.1
  • jupyter-client ==8.6.0
  • jupyter-core ==5.7.1
  • kiwisolver ==1.4.5
  • lazy-loader ==0.3
  • local-migrator ==0.1.10
  • locket ==1.0.0
  • lxml ==5.1.0
  • magicgui ==0.8.1
  • mahotas ==1.4.13
  • markdown-it-py ==3.0.0
  • markupsafe ==2.1.5
  • matplotlib-inline ==0.1.6
  • mdurl ==0.1.2
  • mpmath ==1.3.0
  • mypy-extensions ==1.0.0
  • napari ==0.4.19.post1
  • napari-console ==0.0.9
  • napari-plugin-engine ==0.2.0
  • napari-svg ==0.1.10
  • nest-asyncio ==1.6.0
  • networkx ==3.1
  • nme ==0.1.8
  • npe2 ==0.7.4
  • numpy ==1.24.4
  • numpydoc ==1.6.0
  • oiffile ==2022.9.29
  • openpyxl ==3.1.2
  • packaging ==23.2
  • pandas ==2.0.3
  • parso ==0.8.3
  • partd ==1.4.1
  • partsegcore-compiled-backend ==0.15.1
  • partsegdata ==0.10.0
  • pexpect ==4.9.0
  • pickleshare ==0.7.5
  • pillow ==10.2.0
  • pint ==0.21.1
  • pkgutil-resolve-name ==1.3.10
  • platformdirs ==4.2.0
  • pluggy ==1.4.0
  • pooch ==1.8.1
  • prompt-toolkit ==3.0.43
  • psutil ==5.9.8
  • psygnal ==0.9.5
  • ptyprocess ==0.7.0
  • pure-eval ==0.2.2
  • pyconify ==0.1.6
  • pydantic ==1.10.14
  • pydantic-compat ==0.1.2
  • pygments ==2.17.2
  • pyinstaller ==6.4.0
  • pyinstaller-hooks-contrib ==2024.1
  • pyopengl ==3.1.7
  • pyopengl-accelerate ==3.1.7
  • pyproject-hooks ==1.0.0
  • pyqt5 ==5.15.10
  • pyqt5-qt5 ==5.15.2
  • pyqt5-sip ==12.13.0
  • pyqt6 ==6.6.1
  • pyqt6-qt6 ==6.6.2
  • pyqt6-sip ==13.6.0
  • pyside2 ==5.15.2.1
  • pyside6 ==6.3.1
  • pyside6-addons ==6.3.1
  • pyside6-essentials ==6.3.1
  • pytest ==8.0.2
  • pytest-qt ==4.4.0
  • pytest-timeout ==2.2.0
  • python-dateutil ==2.8.2
  • pytz ==2024.1
  • pywavelets ==1.4.1
  • pyyaml ==6.0.1
  • pyzmq ==25.1.2
  • qtawesome ==1.3.0
  • qtconsole ==5.5.1
  • qtpy ==2.4.1
  • referencing ==0.33.0
  • requests ==2.31.0
  • rich ==13.7.1
  • rpds-py ==0.18.0
  • scikit-image ==0.21.0
  • scipy ==1.10.1
  • sentry-sdk ==1.40.6
  • setuptools ==69.1.1
  • shiboken2 ==5.15.2.1
  • shiboken6 ==6.3.1
  • simpleitk ==2.3.1
  • six ==1.16.0
  • snowballstemmer ==2.2.0
  • sphinx ==7.1.2
  • sphinxcontrib-applehelp ==1.0.4
  • sphinxcontrib-devhelp ==1.0.2
  • sphinxcontrib-htmlhelp ==2.0.1
  • sphinxcontrib-jsmath ==1.0.1
  • sphinxcontrib-qthelp ==1.0.3
  • sphinxcontrib-serializinghtml ==1.1.5
  • stack-data ==0.6.3
  • superqt ==0.6.1
  • sympy ==1.12
  • tabulate ==0.9.0
  • tifffile ==2023.7.10
  • tomli ==2.0.1
  • tomli-w ==1.0.0
  • toolz ==0.12.1
  • tornado ==6.4
  • tqdm ==4.66.2
  • traceback-with-variables ==2.0.4
  • traitlets ==5.14.1
  • typer ==0.9.0
  • typing-extensions ==4.10.0
  • tzdata ==2024.1
  • urllib3 ==2.2.1
  • vispy ==0.14.1
  • wcwidth ==0.2.13
  • wrapt ==1.16.0
  • xlrd ==2.0.1
  • xlsxwriter ==3.2.0
  • zipp ==3.17.0
requirements/constraints_py3.9.txt pypi
  • alabaster ==0.7.16
  • altgraph ==0.17.4
  • app-model ==0.2.4
  • appdirs ==1.4.4
  • asttokens ==2.4.1
  • attrs ==23.2.0
  • babel ==2.14.0
  • build ==1.0.3
  • cachey ==0.2.1
  • certifi ==2024.2.2
  • charset-normalizer ==3.3.2
  • click ==8.1.7
  • cloudpickle ==3.0.0
  • comm ==0.2.1
  • coverage ==7.4.3
  • czifile ==2019.7.2
  • dask ==2024.2.1
  • debugpy ==1.8.1
  • decorator ==5.1.1
  • defusedxml ==0.7.1
  • docstring-parser ==0.15
  • docutils ==0.20.1
  • et-xmlfile ==1.1.0
  • exceptiongroup ==1.2.0
  • executing ==2.0.1
  • fonticon-fontawesome6 ==6.4.0
  • freetype-py ==2.4.0
  • fsspec ==2024.2.0
  • h5py ==3.10.0
  • heapdict ==1.0.1
  • hsluv ==5.0.4
  • idna ==3.6
  • imagecodecs ==2024.1.1
  • imageio ==2.34.0
  • imagesize ==1.4.1
  • importlib-metadata ==7.0.1
  • in-n-out ==0.1.9
  • iniconfig ==2.0.0
  • ipykernel ==6.29.3
  • ipython ==8.18.1
  • jedi ==0.19.1
  • jinja2 ==3.1.3
  • jsonschema ==4.21.1
  • jsonschema-specifications ==2023.12.1
  • jupyter-client ==8.6.0
  • jupyter-core ==5.7.1
  • kiwisolver ==1.4.5
  • lazy-loader ==0.3
  • local-migrator ==0.1.10
  • locket ==1.0.0
  • lxml ==5.1.0
  • magicgui ==0.8.1
  • mahotas ==1.4.13
  • markdown-it-py ==3.0.0
  • markupsafe ==2.1.5
  • matplotlib-inline ==0.1.6
  • mdurl ==0.1.2
  • mpmath ==1.3.0
  • mypy-extensions ==1.0.0
  • napari ==0.4.19.post1
  • napari-console ==0.0.9
  • napari-plugin-engine ==0.2.0
  • napari-svg ==0.1.10
  • nest-asyncio ==1.6.0
  • networkx ==3.2.1
  • nme ==0.1.8
  • npe2 ==0.7.4
  • numpy ==1.26.4
  • numpydoc ==1.6.0
  • oiffile ==2023.8.30
  • openpyxl ==3.1.2
  • packaging ==23.2
  • pandas ==2.2.1
  • parso ==0.8.3
  • partd ==1.4.1
  • partsegcore-compiled-backend ==0.15.6
  • partsegdata ==0.10.0
  • pexpect ==4.9.0
  • pillow ==10.2.0
  • pint ==0.23
  • platformdirs ==4.2.0
  • pluggy ==1.4.0
  • pooch ==1.8.1
  • prompt-toolkit ==3.0.43
  • psutil ==5.9.8
  • psygnal ==0.9.5
  • ptyprocess ==0.7.0
  • pure-eval ==0.2.2
  • pyconify ==0.1.6
  • pydantic ==1.10.14
  • pydantic-compat ==0.1.2
  • pygments ==2.17.2
  • pyinstaller ==6.4.0
  • pyinstaller-hooks-contrib ==2024.1
  • pyopengl ==3.1.7
  • pyopengl-accelerate ==3.1.7
  • pyproject-hooks ==1.0.0
  • pyqt5 ==5.15.10
  • pyqt5-qt5 ==5.15.2
  • pyqt5-sip ==12.13.0
  • pyqt6 ==6.6.1
  • pyqt6-qt6 ==6.6.2
  • pyqt6-sip ==13.6.0
  • pyside2 ==5.15.2.1
  • pyside6 ==6.3.1
  • pyside6-addons ==6.3.1
  • pyside6-essentials ==6.3.1
  • pytest ==8.0.2
  • pytest-qt ==4.4.0
  • pytest-timeout ==2.2.0
  • python-dateutil ==2.8.2
  • pytz ==2024.1
  • pyyaml ==6.0.1
  • pyzmq ==25.1.2
  • qtawesome ==1.3.0
  • qtconsole ==5.5.1
  • qtpy ==2.4.1
  • referencing ==0.33.0
  • requests ==2.31.0
  • rich ==13.7.1
  • rpds-py ==0.18.0
  • scikit-image ==0.22.0
  • scipy ==1.12.0
  • sentry-sdk ==1.40.6
  • setuptools ==69.1.1
  • shiboken2 ==5.15.2.1
  • shiboken6 ==6.3.1
  • simpleitk ==2.3.1
  • six ==1.16.0
  • snowballstemmer ==2.2.0
  • sphinx ==7.2.6
  • sphinxcontrib-applehelp ==1.0.8
  • sphinxcontrib-devhelp ==1.0.6
  • sphinxcontrib-htmlhelp ==2.0.5
  • sphinxcontrib-jsmath ==1.0.1
  • sphinxcontrib-qthelp ==1.0.7
  • sphinxcontrib-serializinghtml ==1.1.10
  • stack-data ==0.6.3
  • superqt ==0.6.1
  • sympy ==1.12
  • tabulate ==0.9.0
  • tifffile ==2024.2.12
  • tomli ==2.0.1
  • tomli-w ==1.0.0
  • toolz ==0.12.1
  • tornado ==6.4
  • tqdm ==4.66.2
  • traceback-with-variables ==2.0.4
  • traitlets ==5.14.1
  • typer ==0.9.0
  • typing-extensions ==4.10.0
  • tzdata ==2024.1
  • urllib3 ==2.2.1
  • vispy ==0.14.1
  • wcwidth ==0.2.13
  • wrapt ==1.16.0
  • xlrd ==2.0.1
  • xlsxwriter ==3.2.0
  • zipp ==3.17.0
requirements/pre_test_problematic_version.txt pypi
  • mpmath * test
  • sentry-sdk * test
requirements/constraints_py3.10_pydantic_1.txt pypi
  • alabaster ==0.7.16
  • altgraph ==0.17.4
  • app-model ==0.2.4
  • appdirs ==1.4.4
  • asttokens ==2.4.1
  • attrs ==23.2.0
  • babel ==2.14.0
  • build ==1.0.3
  • cachey ==0.2.1
  • certifi ==2024.2.2
  • charset-normalizer ==3.3.2
  • click ==8.1.7
  • cloudpickle ==3.0.0
  • comm ==0.2.1
  • coverage ==7.4.3
  • czifile ==2019.7.2
  • dask ==2024.2.1
  • debugpy ==1.8.1
  • decorator ==5.1.1
  • defusedxml ==0.7.1
  • docstring-parser ==0.15
  • docutils ==0.20.1
  • et-xmlfile ==1.1.0
  • exceptiongroup ==1.2.0
  • executing ==2.0.1
  • fonticon-fontawesome6 ==6.4.0
  • freetype-py ==2.4.0
  • fsspec ==2024.2.0
  • h5py ==3.10.0
  • heapdict ==1.0.1
  • hsluv ==5.0.4
  • idna ==3.6
  • imagecodecs ==2024.1.1
  • imageio ==2.34.0
  • imagesize ==1.4.1
  • importlib-metadata ==7.0.1
  • in-n-out ==0.1.9
  • iniconfig ==2.0.0
  • ipykernel ==6.29.3
  • ipython ==8.22.1
  • jedi ==0.19.1
  • jinja2 ==3.1.3
  • jsonschema ==4.21.1
  • jsonschema-specifications ==2023.12.1
  • jupyter-client ==8.6.0
  • jupyter-core ==5.7.1
  • kiwisolver ==1.4.5
  • lazy-loader ==0.3
  • local-migrator ==0.1.10
  • locket ==1.0.0
  • lxml ==5.1.0
  • magicgui ==0.8.1
  • mahotas ==1.4.13
  • markdown-it-py ==3.0.0
  • markupsafe ==2.1.5
  • matplotlib-inline ==0.1.6
  • mdurl ==0.1.2
  • mpmath ==1.3.0
  • mypy-extensions ==1.0.0
  • napari ==0.4.19.post1
  • napari-console ==0.0.9
  • napari-plugin-engine ==0.2.0
  • napari-svg ==0.1.10
  • nest-asyncio ==1.6.0
  • networkx ==3.2.1
  • nme ==0.1.8
  • npe2 ==0.7.4
  • numpy ==1.26.4
  • numpydoc ==1.6.0
  • oiffile ==2023.8.30
  • openpyxl ==3.1.2
  • packaging ==23.2
  • pandas ==2.2.1
  • parso ==0.8.3
  • partd ==1.4.1
  • partsegcore-compiled-backend ==0.15.6
  • partsegdata ==0.10.0
  • pexpect ==4.9.0
  • pillow ==10.2.0
  • pint ==0.23
  • platformdirs ==4.2.0
  • pluggy ==1.4.0
  • pooch ==1.8.1
  • prompt-toolkit ==3.0.43
  • psutil ==5.9.8
  • psygnal ==0.9.5
  • ptyprocess ==0.7.0
  • pure-eval ==0.2.2
  • pyconify ==0.1.6
  • pydantic ==1.10.14
  • pydantic-compat ==0.1.2
  • pygments ==2.17.2
  • pyinstaller ==6.4.0
  • pyinstaller-hooks-contrib ==2024.1
  • pyopengl ==3.1.7
  • pyopengl-accelerate ==3.1.7
  • pyproject-hooks ==1.0.0
  • pyqt5 ==5.15.10
  • pyqt5-qt5 ==5.15.2
  • pyqt5-sip ==12.13.0
  • pyqt6 ==6.6.1
  • pyqt6-qt6 ==6.6.2
  • pyqt6-sip ==13.6.0
  • pyside2 ==5.15.2.1
  • pyside6 ==6.6.2
  • pyside6-addons ==6.6.2
  • pyside6-essentials ==6.6.2
  • pytest ==8.0.2
  • pytest-qt ==4.4.0
  • pytest-timeout ==2.2.0
  • python-dateutil ==2.8.2
  • pytz ==2024.1
  • pyyaml ==6.0.1
  • pyzmq ==25.1.2
  • qtawesome ==1.3.0
  • qtconsole ==5.5.1
  • qtpy ==2.4.1
  • referencing ==0.33.0
  • requests ==2.31.0
  • rich ==13.7.1
  • rpds-py ==0.18.0
  • scikit-image ==0.22.0
  • scipy ==1.12.0
  • sentry-sdk ==1.40.6
  • setuptools ==69.1.1
  • shiboken2 ==5.15.2.1
  • shiboken6 ==6.6.2
  • simpleitk ==2.3.1
  • six ==1.16.0
  • snowballstemmer ==2.2.0
  • sphinx ==7.2.6
  • sphinxcontrib-applehelp ==1.0.8
  • sphinxcontrib-devhelp ==1.0.6
  • sphinxcontrib-htmlhelp ==2.0.5
  • sphinxcontrib-jsmath ==1.0.1
  • sphinxcontrib-qthelp ==1.0.7
  • sphinxcontrib-serializinghtml ==1.1.10
  • stack-data ==0.6.3
  • superqt ==0.6.1
  • sympy ==1.12
  • tabulate ==0.9.0
  • tifffile ==2024.2.12
  • tomli ==2.0.1
  • tomli-w ==1.0.0
  • toolz ==0.12.1
  • tornado ==6.4
  • tqdm ==4.66.2
  • traceback-with-variables ==2.0.4
  • traitlets ==5.14.1
  • typer ==0.9.0
  • typing-extensions ==4.10.0
  • tzdata ==2024.1
  • urllib3 ==2.2.1
  • vispy ==0.14.1
  • wcwidth ==0.2.13
  • wrapt ==1.16.0
  • xlrd ==2.0.1
  • xlsxwriter ==3.2.0
  • zipp ==3.17.0
requirements/constraints_py3.11_pydantic_1.txt pypi
  • alabaster ==0.7.16
  • altgraph ==0.17.4
  • app-model ==0.2.4
  • appdirs ==1.4.4
  • asttokens ==2.4.1
  • attrs ==23.2.0
  • babel ==2.14.0
  • build ==1.0.3
  • cachey ==0.2.1
  • certifi ==2024.2.2
  • charset-normalizer ==3.3.2
  • click ==8.1.7
  • cloudpickle ==3.0.0
  • comm ==0.2.1
  • coverage ==7.4.3
  • czifile ==2019.7.2
  • dask ==2024.2.1
  • debugpy ==1.8.1
  • decorator ==5.1.1
  • defusedxml ==0.7.1
  • docstring-parser ==0.15
  • docutils ==0.20.1
  • et-xmlfile ==1.1.0
  • executing ==2.0.1
  • fonticon-fontawesome6 ==6.4.0
  • freetype-py ==2.4.0
  • fsspec ==2024.2.0
  • h5py ==3.10.0
  • heapdict ==1.0.1
  • hsluv ==5.0.4
  • idna ==3.6
  • imagecodecs ==2024.1.1
  • imageio ==2.34.0
  • imagesize ==1.4.1
  • importlib-metadata ==7.0.1
  • in-n-out ==0.1.9
  • iniconfig ==2.0.0
  • ipykernel ==6.29.3
  • ipython ==8.22.1
  • jedi ==0.19.1
  • jinja2 ==3.1.3
  • jsonschema ==4.21.1
  • jsonschema-specifications ==2023.12.1
  • jupyter-client ==8.6.0
  • jupyter-core ==5.7.1
  • kiwisolver ==1.4.5
  • lazy-loader ==0.3
  • local-migrator ==0.1.10
  • locket ==1.0.0
  • lxml ==5.1.0
  • magicgui ==0.8.1
  • mahotas ==1.4.13
  • markdown-it-py ==3.0.0
  • markupsafe ==2.1.5
  • matplotlib-inline ==0.1.6
  • mdurl ==0.1.2
  • mpmath ==1.3.0
  • mypy-extensions ==1.0.0
  • napari ==0.4.19.post1
  • napari-console ==0.0.9
  • napari-plugin-engine ==0.2.0
  • napari-svg ==0.1.10
  • nest-asyncio ==1.6.0
  • networkx ==3.2.1
  • nme ==0.1.8
  • npe2 ==0.7.4
  • numpy ==1.26.4
  • numpydoc ==1.6.0
  • oiffile ==2023.8.30
  • openpyxl ==3.1.2
  • packaging ==23.2
  • pandas ==2.2.1
  • parso ==0.8.3
  • partd ==1.4.1
  • partsegcore-compiled-backend ==0.15.6
  • partsegdata ==0.10.0
  • pexpect ==4.9.0
  • pillow ==10.2.0
  • pint ==0.23
  • platformdirs ==4.2.0
  • pluggy ==1.4.0
  • pooch ==1.8.1
  • prompt-toolkit ==3.0.43
  • psutil ==5.9.8
  • psygnal ==0.9.5
  • ptyprocess ==0.7.0
  • pure-eval ==0.2.2
  • pyconify ==0.1.6
  • pydantic ==1.10.14
  • pydantic-compat ==0.1.2
  • pygments ==2.17.2
  • pyinstaller ==6.4.0
  • pyinstaller-hooks-contrib ==2024.1
  • pyopengl ==3.1.7
  • pyopengl-accelerate ==3.1.7
  • pyproject-hooks ==1.0.0
  • pyqt5 ==5.15.10
  • pyqt5-qt5 ==5.15.2
  • pyqt5-sip ==12.13.0
  • pyqt6 ==6.6.1
  • pyqt6-qt6 ==6.6.2
  • pyqt6-sip ==13.6.0
  • pyside2 ==5.13.2
  • pyside6 ==6.6.2
  • pyside6-addons ==6.6.2
  • pyside6-essentials ==6.6.2
  • pytest ==8.0.2
  • pytest-qt ==4.4.0
  • pytest-timeout ==2.2.0
  • python-dateutil ==2.8.2
  • pytz ==2024.1
  • pyyaml ==6.0.1
  • pyzmq ==25.1.2
  • qtawesome ==1.3.0
  • qtconsole ==5.5.1
  • qtpy ==2.4.1
  • referencing ==0.33.0
  • requests ==2.31.0
  • rich ==13.7.1
  • rpds-py ==0.18.0
  • scikit-image ==0.22.0
  • scipy ==1.12.0
  • sentry-sdk ==1.40.6
  • setuptools ==69.1.1
  • shiboken2 ==5.13.2
  • shiboken6 ==6.6.2
  • simpleitk ==2.3.1
  • six ==1.16.0
  • snowballstemmer ==2.2.0
  • sphinx ==7.2.6
  • sphinxcontrib-applehelp ==1.0.8
  • sphinxcontrib-devhelp ==1.0.6
  • sphinxcontrib-htmlhelp ==2.0.5
  • sphinxcontrib-jsmath ==1.0.1
  • sphinxcontrib-qthelp ==1.0.7
  • sphinxcontrib-serializinghtml ==1.1.10
  • stack-data ==0.6.3
  • superqt ==0.6.1
  • sympy ==1.12
  • tabulate ==0.9.0
  • tifffile ==2024.2.12
  • tomli-w ==1.0.0
  • toolz ==0.12.1
  • tornado ==6.4
  • tqdm ==4.66.2
  • traceback-with-variables ==2.0.4
  • traitlets ==5.14.1
  • typer ==0.9.0
  • typing-extensions ==4.10.0
  • tzdata ==2024.1
  • urllib3 ==2.2.1
  • vispy ==0.14.1
  • wcwidth ==0.2.13
  • wrapt ==1.16.0
  • xlrd ==2.0.1
  • xlsxwriter ==3.2.0
  • zipp ==3.17.0
requirements/constraints_py3.8_pydantic_1.txt pypi
  • alabaster ==0.7.13
  • altgraph ==0.17.4
  • app-model ==0.2.4
  • appdirs ==1.4.4
  • asttokens ==2.4.1
  • attrs ==23.2.0
  • babel ==2.14.0
  • backcall ==0.2.0
  • build ==1.0.3
  • cachey ==0.2.1
  • certifi ==2024.2.2
  • charset-normalizer ==3.3.2
  • click ==8.1.7
  • cloudpickle ==3.0.0
  • comm ==0.2.1
  • coverage ==7.4.3
  • czifile ==2019.7.2
  • dask ==2023.5.0
  • debugpy ==1.8.1
  • decorator ==5.1.1
  • defusedxml ==0.7.1
  • docstring-parser ==0.15
  • docutils ==0.20.1
  • et-xmlfile ==1.1.0
  • exceptiongroup ==1.2.0
  • executing ==2.0.1
  • fonticon-fontawesome6 ==6.4.0
  • freetype-py ==2.4.0
  • fsspec ==2024.2.0
  • h5py ==3.10.0
  • heapdict ==1.0.1
  • hsluv ==5.0.4
  • idna ==3.6
  • imagecodecs ==2023.3.16
  • imageio ==2.34.0
  • imagesize ==1.4.1
  • importlib-metadata ==7.0.1
  • importlib-resources ==6.1.2
  • in-n-out ==0.1.9
  • iniconfig ==2.0.0
  • ipykernel ==6.29.3
  • ipython ==8.12.3
  • jedi ==0.19.1
  • jinja2 ==3.1.3
  • jsonschema ==4.21.1
  • jsonschema-specifications ==2023.12.1
  • jupyter-client ==8.6.0
  • jupyter-core ==5.7.1
  • kiwisolver ==1.4.5
  • lazy-loader ==0.3
  • local-migrator ==0.1.10
  • locket ==1.0.0
  • lxml ==5.1.0
  • magicgui ==0.8.1
  • mahotas ==1.4.13
  • markdown-it-py ==3.0.0
  • markupsafe ==2.1.5
  • matplotlib-inline ==0.1.6
  • mdurl ==0.1.2
  • mpmath ==1.3.0
  • mypy-extensions ==1.0.0
  • napari ==0.4.19.post1
  • napari-console ==0.0.9
  • napari-plugin-engine ==0.2.0
  • napari-svg ==0.1.10
  • nest-asyncio ==1.6.0
  • networkx ==3.1
  • nme ==0.1.8
  • npe2 ==0.7.4
  • numpy ==1.24.4
  • numpydoc ==1.6.0
  • oiffile ==2022.9.29
  • openpyxl ==3.1.2
  • packaging ==23.2
  • pandas ==2.0.3
  • parso ==0.8.3
  • partd ==1.4.1
  • partsegcore-compiled-backend ==0.15.1
  • partsegdata ==0.10.0
  • pexpect ==4.9.0
  • pickleshare ==0.7.5
  • pillow ==10.2.0
  • pint ==0.21.1
  • pkgutil-resolve-name ==1.3.10
  • platformdirs ==4.2.0
  • pluggy ==1.4.0
  • pooch ==1.8.1
  • prompt-toolkit ==3.0.43
  • psutil ==5.9.8
  • psygnal ==0.9.5
  • ptyprocess ==0.7.0
  • pure-eval ==0.2.2
  • pyconify ==0.1.6
  • pydantic ==1.10.14
  • pydantic-compat ==0.1.2
  • pygments ==2.17.2
  • pyinstaller ==6.4.0
  • pyinstaller-hooks-contrib ==2024.1
  • pyopengl ==3.1.7
  • pyopengl-accelerate ==3.1.7
  • pyproject-hooks ==1.0.0
  • pyqt5 ==5.15.10
  • pyqt5-qt5 ==5.15.2
  • pyqt5-sip ==12.13.0
  • pyqt6 ==6.6.1
  • pyqt6-qt6 ==6.6.2
  • pyqt6-sip ==13.6.0
  • pyside2 ==5.15.2.1
  • pyside6 ==6.3.1
  • pyside6-addons ==6.3.1
  • pyside6-essentials ==6.3.1
  • pytest ==8.0.2
  • pytest-qt ==4.4.0
  • pytest-timeout ==2.2.0
  • python-dateutil ==2.8.2
  • pytz ==2024.1
  • pywavelets ==1.4.1
  • pyyaml ==6.0.1
  • pyzmq ==25.1.2
  • qtawesome ==1.3.0
  • qtconsole ==5.5.1
  • qtpy ==2.4.1
  • referencing ==0.33.0
  • requests ==2.31.0
  • rich ==13.7.1
  • rpds-py ==0.18.0
  • scikit-image ==0.21.0
  • scipy ==1.10.1
  • sentry-sdk ==1.40.6
  • setuptools ==69.1.1
  • shiboken2 ==5.15.2.1
  • shiboken6 ==6.3.1
  • simpleitk ==2.3.1
  • six ==1.16.0
  • snowballstemmer ==2.2.0
  • sphinx ==7.1.2
  • sphinxcontrib-applehelp ==1.0.4
  • sphinxcontrib-devhelp ==1.0.2
  • sphinxcontrib-htmlhelp ==2.0.1
  • sphinxcontrib-jsmath ==1.0.1
  • sphinxcontrib-qthelp ==1.0.3
  • sphinxcontrib-serializinghtml ==1.1.5
  • stack-data ==0.6.3
  • superqt ==0.6.1
  • sympy ==1.12
  • tabulate ==0.9.0
  • tifffile ==2023.7.10
  • tomli ==2.0.1
  • tomli-w ==1.0.0
  • toolz ==0.12.1
  • tornado ==6.4
  • tqdm ==4.66.2
  • traceback-with-variables ==2.0.4
  • traitlets ==5.14.1
  • typer ==0.9.0
  • typing-extensions ==4.10.0
  • tzdata ==2024.1
  • urllib3 ==2.2.1
  • vispy ==0.14.1
  • wcwidth ==0.2.13
  • wrapt ==1.16.0
  • xlrd ==2.0.1
  • xlsxwriter ==3.2.0
  • zipp ==3.17.0
requirements/constraints_py3.9_pydantic_1.txt pypi
  • alabaster ==0.7.16
  • altgraph ==0.17.4
  • app-model ==0.2.4
  • appdirs ==1.4.4
  • asttokens ==2.4.1
  • attrs ==23.2.0
  • babel ==2.14.0
  • build ==1.0.3
  • cachey ==0.2.1
  • certifi ==2024.2.2
  • charset-normalizer ==3.3.2
  • click ==8.1.7
  • cloudpickle ==3.0.0
  • comm ==0.2.1
  • coverage ==7.4.3
  • czifile ==2019.7.2
  • dask ==2024.2.1
  • debugpy ==1.8.1
  • decorator ==5.1.1
  • defusedxml ==0.7.1
  • docstring-parser ==0.15
  • docutils ==0.20.1
  • et-xmlfile ==1.1.0
  • exceptiongroup ==1.2.0
  • executing ==2.0.1
  • fonticon-fontawesome6 ==6.4.0
  • freetype-py ==2.4.0
  • fsspec ==2024.2.0
  • h5py ==3.10.0
  • heapdict ==1.0.1
  • hsluv ==5.0.4
  • idna ==3.6
  • imagecodecs ==2024.1.1
  • imageio ==2.34.0
  • imagesize ==1.4.1
  • importlib-metadata ==7.0.1
  • in-n-out ==0.1.9
  • iniconfig ==2.0.0
  • ipykernel ==6.29.3
  • ipython ==8.18.1
  • jedi ==0.19.1
  • jinja2 ==3.1.3
  • jsonschema ==4.21.1
  • jsonschema-specifications ==2023.12.1
  • jupyter-client ==8.6.0
  • jupyter-core ==5.7.1
  • kiwisolver ==1.4.5
  • lazy-loader ==0.3
  • local-migrator ==0.1.10
  • locket ==1.0.0
  • lxml ==5.1.0
  • magicgui ==0.8.1
  • mahotas ==1.4.13
  • markdown-it-py ==3.0.0
  • markupsafe ==2.1.5
  • matplotlib-inline ==0.1.6
  • mdurl ==0.1.2
  • mpmath ==1.3.0
  • mypy-extensions ==1.0.0
  • napari ==0.4.19.post1
  • napari-console ==0.0.9
  • napari-plugin-engine ==0.2.0
  • napari-svg ==0.1.10
  • nest-asyncio ==1.6.0
  • networkx ==3.2.1
  • nme ==0.1.8
  • npe2 ==0.7.4
  • numpy ==1.26.4
  • numpydoc ==1.6.0
  • oiffile ==2023.8.30
  • openpyxl ==3.1.2
  • packaging ==23.2
  • pandas ==2.2.1
  • parso ==0.8.3
  • partd ==1.4.1
  • partsegcore-compiled-backend ==0.15.6
  • partsegdata ==0.10.0
  • pexpect ==4.9.0
  • pillow ==10.2.0
  • pint ==0.23
  • platformdirs ==4.2.0
  • pluggy ==1.4.0
  • pooch ==1.8.1
  • prompt-toolkit ==3.0.43
  • psutil ==5.9.8
  • psygnal ==0.9.5
  • ptyprocess ==0.7.0
  • pure-eval ==0.2.2
  • pyconify ==0.1.6
  • pydantic ==1.10.14
  • pydantic-compat ==0.1.2
  • pygments ==2.17.2
  • pyinstaller ==6.4.0
  • pyinstaller-hooks-contrib ==2024.1
  • pyopengl ==3.1.7
  • pyopengl-accelerate ==3.1.7
  • pyproject-hooks ==1.0.0
  • pyqt5 ==5.15.10
  • pyqt5-qt5 ==5.15.2
  • pyqt5-sip ==12.13.0
  • pyqt6 ==6.6.1
  • pyqt6-qt6 ==6.6.2
  • pyqt6-sip ==13.6.0
  • pyside2 ==5.15.2.1
  • pyside6 ==6.3.1
  • pyside6-addons ==6.3.1
  • pyside6-essentials ==6.3.1
  • pytest ==8.0.2
  • pytest-qt ==4.4.0
  • pytest-timeout ==2.2.0
  • python-dateutil ==2.8.2
  • pytz ==2024.1
  • pyyaml ==6.0.1
  • pyzmq ==25.1.2
  • qtawesome ==1.3.0
  • qtconsole ==5.5.1
  • qtpy ==2.4.1
  • referencing ==0.33.0
  • requests ==2.31.0
  • rich ==13.7.1
  • rpds-py ==0.18.0
  • scikit-image ==0.22.0
  • scipy ==1.12.0
  • sentry-sdk ==1.40.6
  • setuptools ==69.1.1
  • shiboken2 ==5.15.2.1
  • shiboken6 ==6.3.1
  • simpleitk ==2.3.1
  • six ==1.16.0
  • snowballstemmer ==2.2.0
  • sphinx ==7.2.6
  • sphinxcontrib-applehelp ==1.0.8
  • sphinxcontrib-devhelp ==1.0.6
  • sphinxcontrib-htmlhelp ==2.0.5
  • sphinxcontrib-jsmath ==1.0.1
  • sphinxcontrib-qthelp ==1.0.7
  • sphinxcontrib-serializinghtml ==1.1.10
  • stack-data ==0.6.3
  • superqt ==0.6.1
  • sympy ==1.12
  • tabulate ==0.9.0
  • tifffile ==2024.2.12
  • tomli ==2.0.1
  • tomli-w ==1.0.0
  • toolz ==0.12.1
  • tornado ==6.4
  • tqdm ==4.66.2
  • traceback-with-variables ==2.0.4
  • traitlets ==5.14.1
  • typer ==0.9.0
  • typing-extensions ==4.10.0
  • tzdata ==2024.1
  • urllib3 ==2.2.1
  • vispy ==0.14.1
  • wcwidth ==0.2.13
  • wrapt ==1.16.0
  • xlrd ==2.0.1
  • xlsxwriter ==3.2.0
  • zipp ==3.17.0
requirements/pydantic_1.txt pypi
  • pydantic <2